| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxc3a | 0.325 | prdx2 | -0.119 |
| hoxb9a | 0.277 | hbae1.1 | -0.113 |
| hoxc6b | 0.277 | hbbe1.3 | -0.109 |
| cdx4 | 0.276 | hbae3 | -0.109 |
| hoxb7a | 0.270 | hbae1.3 | -0.104 |
| hoxb10a | 0.251 | hbbe2 | -0.102 |
| hoxc9a | 0.241 | hbbe1.1 | -0.100 |
| hoxa9a | 0.237 | cahz | -0.100 |
| BX005254.3 | 0.233 | blvrb | -0.097 |
| BX001014.2 | 0.221 | hemgn | -0.092 |
| ndnf | 0.206 | hbbe1.2 | -0.090 |
| hoxb8a | 0.205 | slc4a1a | -0.090 |
| hoxb1b | 0.197 | alas2 | -0.086 |
| mnx1 | 0.190 | tspo | -0.083 |
| hoxd9a | 0.189 | zgc:163057 | -0.082 |
| hoxb3a | 0.180 | gpx1a | -0.082 |
| etv2 | 0.179 | nt5c2l1 | -0.079 |
| dact2 | 0.178 | epb41b | -0.078 |
| hoxa9b | 0.173 | creg1 | -0.078 |
| hoxd10a | 0.171 | nmt1b | -0.073 |
| vox | 0.170 | si:ch211-207c6.2 | -0.072 |
| hes6 | 0.166 | si:ch211-250g4.3 | -0.072 |
| cdx1a | 0.165 | tmem14ca | -0.067 |
| gdf6a | 0.165 | fth1a | -0.067 |
| dhrs3b | 0.163 | hdr | -0.067 |
| id1 | 0.162 | sptb | -0.067 |
| hoxb6b | 0.160 | tmod4 | -0.066 |
| lin28a | 0.158 | plac8l1 | -0.065 |
| flrt3 | 0.157 | si:ch211-227m13.1 | -0.063 |
| hoxa10b | 0.157 | hbae5 | -0.063 |
| tspan7 | 0.156 | urod | -0.062 |
| cx43.4 | 0.156 | klf1 | -0.061 |
| pfn2l | 0.154 | hbbe3 | -0.061 |
| tpm4a | 0.154 | rfesd | -0.061 |
| arid3b | 0.153 | tfr1a | -0.059 |