| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| cdx4 | 0.673 | rplp2 | -0.200 |
| BX005254.3 | 0.603 | gapdhs | -0.196 |
| hoxb10a | 0.582 | eef1da | -0.191 |
| hoxb7a | 0.562 | krt91 | -0.189 |
| hoxb9a | 0.556 | capns1a | -0.183 |
| hoxd9a | 0.540 | anxa1a | -0.183 |
| hoxc3a | 0.533 | anxa2a | -0.172 |
| hoxc6b | 0.512 | rps29 | -0.171 |
| apoc1 | 0.511 | aqp3a | -0.170 |
| insl5a | 0.505 | ahcy | -0.161 |
| emx2 | 0.493 | s100v1 | -0.159 |
| LOC101882251 | 0.491 | icn | -0.158 |
| vcana | 0.461 | pvalb1 | -0.156 |
| sp8b | 0.460 | capgb | -0.155 |
| hoxd10a | 0.459 | krtt1c19e | -0.153 |
| hoxa10b | 0.440 | s100v2 | -0.152 |
| crabp2a | 0.437 | cotl1 | -0.151 |
| hoxa9b | 0.433 | col1a1b | -0.151 |
| mllt3 | 0.432 | igfbp7 | -0.150 |
| nradd | 0.424 | pvalb2 | -0.150 |
| sp8a | 0.415 | col1a2 | -0.146 |
| prickle1a | 0.413 | epgn | -0.146 |
| hoxd3a | 0.404 | sparc | -0.144 |
| hoxd12a | 0.402 | si:dkey-33c14.3 | -0.140 |
| asb11 | 0.401 | cxl34b.11 | -0.139 |
| hoxd11a | 0.396 | ak1 | -0.139 |
| znfl2a | 0.394 | s100a10b | -0.138 |
| hoxa9a | 0.392 | col1a1a | -0.137 |
| BX927258.1 | 0.391 | pycard | -0.134 |
| tmeff1b | 0.383 | gstm.3 | -0.134 |
| b3gnt7 | 0.367 | rbp4 | -0.131 |
| tpm4a | 0.362 | ptmaa | -0.130 |
| inaa | 0.360 | si:ch211-105c13.3 | -0.129 |
| ptgs1 | 0.359 | rpl29 | -0.128 |
| ccdc3a | 0.358 | actc1b | -0.124 |