| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| cdx4 | 0.500 | krt91 | -0.224 |
| hoxb10a | 0.490 | gapdhs | -0.214 |
| BX005254.3 | 0.467 | capns1a | -0.211 |
| hoxb9a | 0.462 | krtt1c19e | -0.209 |
| LOC101882251 | 0.449 | anxa1a | -0.196 |
| hoxb7a | 0.443 | anxa2a | -0.189 |
| vcana | 0.433 | si:dkey-33c14.3 | -0.188 |
| hoxc8a | 0.432 | rbp4 | -0.187 |
| sp8b | 0.428 | aqp3a | -0.180 |
| hoxd9a | 0.427 | rplp2 | -0.175 |
| hoxa10b | 0.409 | cxl34b.11 | -0.174 |
| hoxd10a | 0.408 | col1a1b | -0.172 |
| insl5a | 0.405 | zgc:136930 | -0.168 |
| hoxd12a | 0.396 | eef1da | -0.167 |
| apoc1 | 0.389 | krt5 | -0.166 |
| ccdc3a | 0.389 | col14a1b | -0.162 |
| hoxc3a | 0.387 | cotl1 | -0.160 |
| emx2 | 0.381 | capgb | -0.159 |
| hoxa9b | 0.356 | si:dkey-183i3.5 | -0.157 |
| hoxa11b | 0.355 | ak1 | -0.156 |
| hoxc11b | 0.346 | ahcy | -0.155 |
| hoxc6b | 0.345 | epgn | -0.154 |
| prickle1a | 0.343 | pycard | -0.153 |
| crabp2a | 0.339 | lgals1l1 | -0.152 |
| sp8a | 0.336 | col1a2 | -0.152 |
| hoxd11a | 0.333 | wu:fa03e10 | -0.148 |
| hoxd3a | 0.331 | si:ch211-105c13.3 | -0.146 |
| nradd | 0.328 | aep1 | -0.142 |
| b3gnt7 | 0.318 | s100v1 | -0.142 |
| XLOC-042222 | 0.318 | col1a1a | -0.140 |
| tpm4a | 0.311 | col17a1a | -0.140 |
| tmeff1b | 0.310 | pvalb1 | -0.138 |
| apela | 0.303 | sparc | -0.137 |
| cdaa | 0.301 | s100v2 | -0.136 |
| sp6 | 0.300 | si:ch211-39i22.1 | -0.134 |