| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxd12a | 0.549 | NC-002333.4 | -0.075 |
| hoxc13a | 0.500 | stm | -0.072 |
| hoxc13b | 0.444 | si:ch211-152c2.3 | -0.070 |
| hoxa13a | 0.418 | marcksl1b | -0.070 |
| hoxb10a | 0.407 | s100a1 | -0.069 |
| hoxa13b | 0.397 | akap12b | -0.067 |
| hoxb13a | 0.381 | insb | -0.067 |
| gdf11 | 0.372 | anp32e | -0.064 |
| hoxc11a | 0.369 | fscn1a | -0.062 |
| hoxd10a | 0.367 | FQ323156.1 | -0.061 |
| hoxa11a | 0.349 | tbx16 | -0.061 |
| hoxa10b | 0.315 | nr6a1a | -0.059 |
| lrrc17 | 0.314 | tdgf1 | -0.059 |
| her12 | 0.312 | ell2 | -0.058 |
| sall4 | 0.309 | col9a1b | -0.057 |
| fgf4 | 0.307 | si:ch73-23l24.1 | -0.057 |
| pcp4a | 0.292 | cmtm6 | -0.057 |
| si:dkeyp-110a12.4 | 0.288 | pitx2 | -0.057 |
| fgf3 | 0.288 | wu:fb97g03 | -0.057 |
| alpi.1 | 0.284 | chrd | -0.056 |
| hoxc12a | 0.282 | si:dkey-66i24.9 | -0.056 |
| her15.1 | 0.278 | zgc:113232 | -0.056 |
| zgc:162939 | 0.276 | aldob | -0.056 |
| hoxc12b | 0.272 | si:ch73-160h15.3 | -0.055 |
| hoxa9a | 0.265 | bms1 | -0.055 |
| hoxc10a | 0.259 | shisa2a | -0.055 |
| hoxd11a | 0.258 | csrp1a | -0.054 |
| myclb | 0.254 | COX7A2 | -0.054 |
| XLOC-042222 | 0.253 | srrm1 | -0.054 |
| hoxa11b | 0.252 | snrnp70 | -0.054 |
| her1 | 0.245 | metap2b | -0.054 |
| fgf20a | 0.243 | chchd2 | -0.054 |
| hoxc11b | 0.239 | atp1b3b | -0.054 |
| her4.1 | 0.236 | hnrnpa1a | -0.053 |
| her2 | 0.234 | lrrc59 | -0.053 |