| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxd9a | 0.361 | fibina | -0.073 |
| hoxd11a | 0.242 | foxp4 | -0.064 |
| hoxd12a | 0.232 | dlx5a | -0.062 |
| hoxa10b | 0.227 | barx1 | -0.060 |
| hoxc11a | 0.226 | foxc1b | -0.060 |
| hoxa11b | 0.226 | six1a | -0.059 |
| hoxa9b | 0.209 | six2a | -0.059 |
| hoxb10a | 0.191 | cldn11a | -0.056 |
| hoxa11a | 0.181 | dlx2a | -0.054 |
| cdx4 | 0.180 | hpgd | -0.053 |
| hoxb9a | 0.177 | rarga | -0.051 |
| hoxc10a | 0.176 | eya1 | -0.050 |
| BX005254.3 | 0.175 | dlx4a | -0.050 |
| hoxc11b | 0.153 | LO018188.1 | -0.048 |
| tbx5a | 0.147 | igf2b | -0.048 |
| emilin2b | 0.147 | dlx3b | -0.047 |
| apela | 0.144 | nfia | -0.046 |
| wu:fb97g03 | 0.142 | ecrg4a | -0.045 |
| hoxa9a | 0.139 | dlx1a | -0.045 |
| vox | 0.135 | otos | -0.044 |
| aplnr2 | 0.120 | fxyd1 | -0.044 |
| hoxc9a | 0.119 | lhx6 | -0.044 |
| hoxc3a | 0.117 | col9a1a | -0.044 |
| hoxc6b | 0.116 | adgrl2a | -0.044 |
| hoxc12b | 0.115 | foxf2a | -0.044 |
| hoxb7a | 0.114 | dlx4b | -0.043 |
| hoxd13a | 0.114 | cdh11 | -0.043 |
| hoxa13b | 0.113 | sfrp2 | -0.043 |
| cfd | 0.110 | ifitm1 | -0.042 |
| tuba8l2 | 0.108 | cd248b | -0.041 |
| hoxd3a | 0.107 | socs3a | -0.041 |
| arid3c | 0.105 | alx1 | -0.041 |
| fbn2a.1 | 0.103 | prss35 | -0.041 |
| fbln1 | 0.103 | crip1 | -0.040 |
| BX005254.2 | 0.103 | LOC101883507 | -0.040 |