| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxd9a | 0.443 | fabp7a | -0.240 |
| hoxa10b | 0.438 | atp1a1b | -0.185 |
| hoxa11b | 0.417 | gpm6bb | -0.182 |
| hoxd12a | 0.383 | zgc:165461 | -0.182 |
| hoxc10a | 0.380 | CU467822.1 | -0.168 |
| hoxd11a | 0.376 | actb2 | -0.166 |
| hoxb10a | 0.349 | atp1b4 | -0.152 |
| hoxc11a | 0.342 | CR848047.1 | -0.149 |
| hoxa9b | 0.312 | msi1 | -0.146 |
| cdx4 | 0.312 | ppap2d | -0.145 |
| hoxa11a | 0.308 | mdka | -0.144 |
| hoxc11b | 0.301 | cd82a | -0.143 |
| BX005254.3 | 0.278 | slc1a2b | -0.142 |
| sp5l | 0.267 | notch3 | -0.135 |
| hoxa9a | 0.263 | efhd1 | -0.135 |
| hoxd3a | 0.254 | qki2 | -0.134 |
| chrd | 0.239 | nfia | -0.132 |
| pou5f3 | 0.229 | itm2ba | -0.132 |
| apela | 0.228 | sparc | -0.128 |
| nkx1.2la | 0.224 | fgfr2 | -0.127 |
| nradd | 0.221 | fgfr3 | -0.127 |
| hoxb9a | 0.217 | cd63 | -0.127 |
| hoxc12b | 0.216 | si:ch211-251b21.1 | -0.124 |
| cxcr4a | 0.208 | glula | -0.123 |
| noto | 0.201 | ptn | -0.122 |
| fgf8a | 0.201 | slc1a3b | -0.121 |
| XLOC-042222 | 0.196 | plp1a | -0.120 |
| kif26ab | 0.189 | tmem47 | -0.119 |
| mllt3 | 0.184 | actb1 | -0.119 |
| hoxb7a | 0.182 | si:ch73-21g5.7 | -0.118 |
| BX005254.2 | 0.181 | fabp3 | -0.118 |
| znfl2a | 0.178 | sox9a | -0.117 |
| foxd5 | 0.174 | klf6a | -0.117 |
| hoxc12a | 0.171 | si:ch1073-303k11.2 | -0.116 |
| dnase1l4.1 | 0.171 | id1 | -0.113 |