| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxd9a | 0.389 | hbae1.1 | -0.135 |
| hoxa11b | 0.366 | hbbe1.3 | -0.128 |
| hoxb10a | 0.337 | hbae3 | -0.128 |
| hoxa9a | 0.300 | hbbe1.1 | -0.124 |
| hoxb9a | 0.300 | hbae1.3 | -0.124 |
| hoxc9a | 0.286 | hbbe2 | -0.124 |
| hoxb7a | 0.284 | cahz | -0.123 |
| hoxa10b | 0.283 | prdx2 | -0.117 |
| hoxc11a | 0.274 | blvrb | -0.116 |
| mnx1 | 0.274 | hemgn | -0.115 |
| hoxc3a | 0.274 | hbbe1.2 | -0.109 |
| hoxa11a | 0.271 | alas2 | -0.106 |
| BX005254.3 | 0.261 | tspo | -0.103 |
| hoxd11a | 0.258 | slc4a1a | -0.102 |
| hoxc10a | 0.244 | nt5c2l1 | -0.098 |
| etv2 | 0.234 | si:ch211-250g4.3 | -0.097 |
| hoxa9b | 0.221 | zgc:163057 | -0.096 |
| hoxc11b | 0.220 | gpx1a | -0.096 |
| stab2 | 0.218 | epb41b | -0.096 |
| dab2 | 0.213 | fth1a | -0.096 |
| hoxc6b | 0.212 | nmt1b | -0.093 |
| fbln1 | 0.205 | si:ch211-207c6.2 | -0.093 |
| gdf6a | 0.204 | creg1 | -0.091 |
| hoxd12a | 0.200 | plac8l1 | -0.083 |
| postnb | 0.198 | tmod4 | -0.082 |
| fgf10b | 0.197 | si:ch211-227m13.1 | -0.078 |
| hoxd3a | 0.195 | tmem14ca | -0.075 |
| tbxtb | 0.195 | klf1 | -0.074 |
| mrc1a | 0.194 | tfr1a | -0.072 |
| ndnf | 0.191 | hbae5 | -0.070 |
| wnt2bb | 0.189 | sptb | -0.068 |
| XLOC-042222 | 0.189 | hdr | -0.067 |
| gpr182 | 0.183 | uros | -0.067 |
| aqp8a.1 | 0.178 | rfesd | -0.066 |
| lsp1 | 0.177 | add2 | -0.065 |