| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb10a | 0.616 | marcksl1b | -0.153 |
| fgf20a | 0.613 | stm | -0.144 |
| gdf11 | 0.548 | NC-002333.4 | -0.133 |
| hoxd9a | 0.542 | si:ch211-152c2.3 | -0.131 |
| hoxd12a | 0.523 | tbx16 | -0.120 |
| alpi.1 | 0.521 | fscn1a | -0.117 |
| her12 | 0.520 | s100a1 | -0.113 |
| hoxd11a | 0.510 | metap2b | -0.112 |
| BX005254.3 | 0.510 | pitx2 | -0.110 |
| fgf4 | 0.496 | wu:fb97g03 | -0.109 |
| sall4 | 0.478 | ube2na | -0.107 |
| hoxa10b | 0.459 | si:ch211-243g18.2 | -0.107 |
| pcp4a | 0.456 | chrd | -0.107 |
| si:ch211-129o18.4 | 0.445 | cst3 | -0.107 |
| hoxa11b | 0.440 | si:dkey-66i24.9 | -0.107 |
| sst6 | 0.440 | FQ323156.1 | -0.106 |
| lrrc17 | 0.435 | polr2gl | -0.106 |
| myclb | 0.432 | COX7A2 | -0.105 |
| hoxa9a | 0.431 | shisa2a | -0.105 |
| fzd10 | 0.421 | acin1b | -0.102 |
| parvb | 0.417 | si:ch73-160h15.3 | -0.102 |
| tmem134 | 0.415 | pou5f3 | -0.100 |
| her15.1 | 0.415 | hnrnpd | -0.098 |
| her4.1 | 0.415 | epcam | -0.098 |
| hoxc11b | 0.410 | insb | -0.097 |
| hoxc11a | 0.407 | ndr2 | -0.097 |
| hoxc3a | 0.404 | zmp:0000000624 | -0.097 |
| fn1a | 0.398 | ISCU | -0.096 |
| BX005254.2 | 0.394 | ddx4 | -0.096 |
| fgf3 | 0.391 | anp32e | -0.096 |
| hoxb9a | 0.373 | rps18 | -0.096 |
| hoxb7a | 0.373 | add3b | -0.095 |
| her1 | 0.370 | cactin | -0.095 |
| hoxd13a | 0.367 | sfpq | -0.095 |
| hoxc10a | 0.361 | klf17 | -0.094 |