| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxd10a | 0.616 | marcksl1b | -0.145 |
| hoxd12a | 0.550 | NC-002333.4 | -0.128 |
| gdf11 | 0.539 | stm | -0.127 |
| fgf20a | 0.526 | si:ch211-152c2.3 | -0.114 |
| hoxa10b | 0.515 | fscn1a | -0.106 |
| her12 | 0.515 | tbx16 | -0.105 |
| sall4 | 0.503 | s100a1 | -0.105 |
| BX005254.3 | 0.500 | akap12b | -0.103 |
| hoxd11a | 0.485 | insb | -0.098 |
| hoxd9a | 0.473 | metap2b | -0.098 |
| alpi.1 | 0.468 | pitx2 | -0.098 |
| hoxa9a | 0.460 | shisa2a | -0.096 |
| lrrc17 | 0.460 | COX7A2 | -0.096 |
| pcp4a | 0.433 | chrd | -0.095 |
| her15.1 | 0.430 | si:dkey-66i24.9 | -0.094 |
| hoxa11b | 0.423 | cfl1l | -0.094 |
| myclb | 0.418 | epcam | -0.093 |
| fzd10 | 0.409 | polr2gl | -0.092 |
| hoxd13a | 0.407 | wu:fb97g03 | -0.092 |
| fgf4 | 0.401 | si:ch73-160h15.3 | -0.091 |
| her1 | 0.400 | acin1b | -0.091 |
| si:ch211-129o18.4 | 0.393 | cst3 | -0.090 |
| aplnr2 | 0.388 | anp32e | -0.090 |
| her4.1 | 0.388 | ddx4 | -0.089 |
| fgf3 | 0.381 | cmtm6 | -0.089 |
| hoxc11b | 0.380 | ube2na | -0.089 |
| cdaa | 0.374 | ndr2 | -0.088 |
| XLOC-042222 | 0.372 | ISCU | -0.087 |
| hoxb7a | 0.370 | ell2 | -0.087 |
| fgf8a | 0.368 | klf17 | -0.087 |
| zgc:162939 | 0.363 | add3b | -0.086 |
| hoxa11a | 0.361 | gsc | -0.086 |
| hoxc11a | 0.360 | csrp1a | -0.084 |
| tmem134 | 0.360 | zmp:0000000624 | -0.084 |
| hoxc3a | 0.355 | FQ323156.1 | -0.084 |