| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb9a | 0.380 | fabp7a | -0.287 |
| hoxa9a | 0.379 | atp1a1b | -0.217 |
| hoxd9a | 0.371 | CU467822.1 | -0.191 |
| hoxa10b | 0.362 | zgc:165461 | -0.190 |
| hoxd10a | 0.349 | slc1a2b | -0.189 |
| hoxa9b | 0.327 | gpm6bb | -0.185 |
| hoxa11b | 0.317 | ptn | -0.179 |
| hoxc9a | 0.314 | ppap2d | -0.178 |
| cdx4 | 0.314 | atp1b4 | -0.177 |
| hoxd12a | 0.288 | qki2 | -0.176 |
| hoxc10a | 0.279 | CR848047.1 | -0.174 |
| sp5l | 0.276 | efhd1 | -0.170 |
| BX005254.3 | 0.271 | cd82a | -0.167 |
| hoxb7a | 0.259 | cd63 | -0.162 |
| hoxd11a | 0.256 | itm2ba | -0.161 |
| hoxd3a | 0.250 | nfia | -0.159 |
| hoxc3a | 0.246 | slc1a3b | -0.158 |
| nradd | 0.238 | glula | -0.158 |
| robo3 | 0.230 | si:ch211-66e2.5 | -0.154 |
| hoxc11a | 0.227 | cd81a | -0.152 |
| apela | 0.222 | fgfr2 | -0.152 |
| scrt1a | 0.221 | klf6a | -0.150 |
| chrd | 0.220 | gpr37l1b | -0.148 |
| XLOC-042222 | 0.218 | cspg5a | -0.146 |
| hoxa11a | 0.210 | si:ch1073-303k11.2 | -0.144 |
| h3f3d | 0.209 | cx43 | -0.143 |
| hoxc11b | 0.209 | cspg5b | -0.140 |
| pou5f3 | 0.207 | sox9a | -0.140 |
| lhx1a | 0.202 | cxcl12a | -0.139 |
| mllt3 | 0.202 | slc3a2a | -0.138 |
| nkx1.2la | 0.202 | sparc | -0.135 |
| fgf8a | 0.201 | marcksl1a | -0.134 |
| hsp90ab1 | 0.198 | fgfr3 | -0.134 |
| BX001014.2 | 0.197 | cdo1 | -0.134 |
| BX005254.2 | 0.197 | slc4a4a | -0.130 |