| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| mnx1 | 0.464 | hbae1.1 | -0.082 |
| BX005254.3 | 0.440 | hbbe1.3 | -0.081 |
| hoxc3a | 0.387 | hbae3 | -0.080 |
| hoxb7a | 0.381 | hbae1.3 | -0.074 |
| hoxa10b | 0.344 | prdx2 | -0.074 |
| fbln1 | 0.341 | hbbe2 | -0.073 |
| hoxa11b | 0.340 | cahz | -0.072 |
| hoxd10a | 0.337 | blvrb | -0.072 |
| fgf10b | 0.324 | hbbe1.1 | -0.071 |
| vcana | 0.322 | tspo | -0.069 |
| hoxd9a | 0.308 | hemgn | -0.069 |
| npas4l | 0.305 | hbbe1.2 | -0.067 |
| hoxc10a | 0.305 | alas2 | -0.064 |
| BX001014.2 | 0.298 | pvalb1 | -0.061 |
| wnt2bb | 0.297 | slc4a1a | -0.059 |
| apela | 0.297 | gpx1a | -0.059 |
| hoxb9a | 0.295 | nt5c2l1 | -0.059 |
| hoxa9a | 0.287 | pvalb2 | -0.057 |
| tbxtb | 0.277 | tmem14ca | -0.057 |
| sall4 | 0.270 | zgc:163057 | -0.057 |
| pax8 | 0.267 | nmt1b | -0.056 |
| isl2a | 0.262 | creg1 | -0.054 |
| hoxa11a | 0.257 | si:ch211-207c6.2 | -0.053 |
| lsp1 | 0.255 | si:ch211-250g4.3 | -0.052 |
| lin28a | 0.252 | epb41b | -0.051 |
| hoxc8a | 0.251 | plac8l1 | -0.049 |
| fbn2a.1 | 0.248 | tmod4 | -0.048 |
| hoxc11a | 0.247 | si:ch211-227m13.1 | -0.048 |
| cdx4 | 0.247 | actc1b | -0.048 |
| vox | 0.246 | fth1a | -0.047 |
| tbxta | 0.234 | selenoj | -0.046 |
| hoxc6b | 0.231 | mbnl1 | -0.044 |
| BX927395.1 | 0.230 | klf1 | -0.044 |
| ripply2 | 0.228 | hbae5 | -0.043 |
| hoxd11a | 0.228 | ucp3 | -0.042 |