| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb7a | 0.743 | gapdhs | -0.240 |
| cdx4 | 0.690 | anxa1a | -0.228 |
| BX005254.3 | 0.686 | krt91 | -0.228 |
| hoxb9a | 0.667 | capns1a | -0.227 |
| hoxd9a | 0.648 | aqp3a | -0.224 |
| hoxd10a | 0.643 | col1a1b | -0.217 |
| hoxd12a | 0.640 | eef1da | -0.216 |
| hoxa10b | 0.630 | rplp2 | -0.216 |
| sp8b | 0.616 | cotl1 | -0.214 |
| LOC101882251 | 0.609 | krtt1c19e | -0.207 |
| insl5a | 0.601 | col1a2 | -0.199 |
| hoxc8a | 0.582 | s100a10b | -0.198 |
| hoxd11a | 0.577 | anxa2a | -0.194 |
| hoxa9b | 0.539 | rbp4 | -0.191 |
| apoc1 | 0.534 | sparc | -0.190 |
| hoxa11b | 0.531 | postnb | -0.188 |
| vcana | 0.523 | si:dkey-33c14.3 | -0.186 |
| hoxc11b | 0.511 | capgb | -0.186 |
| apela | 0.510 | col1a1a | -0.181 |
| ccdc3a | 0.506 | col14a1b | -0.173 |
| hoxc6b | 0.503 | col4a5 | -0.173 |
| hoxc3a | 0.501 | pycard | -0.172 |
| nkx1.2la | 0.498 | s100v1 | -0.172 |
| emx2 | 0.497 | col4a6 | -0.170 |
| crabp2a | 0.494 | si:ch211-39i22.1 | -0.170 |
| mllt3 | 0.490 | cxl34b.11 | -0.169 |
| sp5l | 0.485 | ak1 | -0.167 |
| hoxa9a | 0.464 | epgn | -0.162 |
| nradd | 0.451 | rps29 | -0.162 |
| sp8a | 0.444 | pvalb1 | -0.161 |
| cdaa | 0.440 | ahcy | -0.160 |
| prickle1a | 0.436 | itgb4 | -0.157 |
| tmeff1b | 0.432 | s100v2 | -0.156 |
| rgs3a | 0.431 | ptmaa | -0.153 |
| her12 | 0.423 | pvalb2 | -0.153 |