| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb9a | 0.340 | col9a1a | -0.078 |
| cdx4 | 0.305 | col2a1a | -0.077 |
| hoxc9a | 0.243 | col9a2 | -0.071 |
| BX005254.3 | 0.241 | foxc1b | -0.070 |
| wu:fb97g03 | 0.235 | six1a | -0.068 |
| hoxa9a | 0.223 | fgfbp2b | -0.065 |
| emilin2b | 0.215 | rarga | -0.064 |
| hoxb7a | 0.213 | barx1 | -0.060 |
| hoxa10b | 0.206 | col11a2 | -0.059 |
| hoxa9b | 0.203 | col9a3 | -0.057 |
| BX001014.2 | 0.194 | ecrg4a | -0.057 |
| hoxd9a | 0.191 | fibina | -0.056 |
| hoxc10a | 0.191 | dlx5a | -0.056 |
| hoxd10a | 0.191 | gsc | -0.056 |
| cfd | 0.184 | cnmd | -0.055 |
| hoxa11b | 0.184 | LO018188.1 | -0.054 |
| hoxc11a | 0.173 | six2a | -0.054 |
| tuba8l2 | 0.173 | CU929237.1 | -0.054 |
| fbln1 | 0.168 | VIT | -0.052 |
| znfl2a | 0.165 | sox9a | -0.049 |
| hoxc3a | 0.164 | hpgd | -0.049 |
| BX469925.3 | 0.164 | fxyd1 | -0.048 |
| hoxa11a | 0.164 | sema3bl | -0.048 |
| vox | 0.159 | cyp26b1 | -0.047 |
| hoxc6b | 0.152 | dlx4a | -0.047 |
| fgf10b | 0.148 | CYTL1 | -0.047 |
| aplnr2 | 0.142 | cldn11a | -0.046 |
| hoxc8a | 0.140 | otos | -0.046 |
| hoxb1b | 0.137 | dlx2a | -0.045 |
| hoxc11b | 0.136 | KCTD15 | -0.044 |
| apela | 0.135 | col8a2 | -0.044 |
| hoxd11a | 0.134 | dlx3b | -0.044 |
| ccdc3a | 0.130 | tbx15 | -0.044 |
| postnb | 0.128 | rgs5a | -0.044 |
| fbn2a.1 | 0.128 | mt-atp6 | -0.044 |