| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb9a | 0.231 | nova2 | -0.037 |
| hoxd9a | 0.200 | marcksl1b | -0.036 |
| hoxd10a | 0.193 | NC-002333.4 | -0.035 |
| hoxa10b | 0.184 | celf2 | -0.034 |
| hoxc9a | 0.175 | gpm6aa | -0.034 |
| hoxa11b | 0.160 | CR383676.1 | -0.032 |
| hoxa9a | 0.159 | mdkb | -0.031 |
| hoxd12a | 0.156 | hmgb3a | -0.031 |
| hoxb7a | 0.155 | hmgb1a | -0.028 |
| hoxd11a | 0.151 | mt-co2 | -0.027 |
| BX005254.3 | 0.138 | hnrnpa1a | -0.027 |
| hoxa9b | 0.133 | si:ch211-137a8.4 | -0.026 |
| hoxc11a | 0.125 | COX3 | -0.026 |
| hoxc10a | 0.119 | si:dkey-276j7.1 | -0.026 |
| hoxc3a | 0.109 | cspg5a | -0.026 |
| BX001014.2 | 0.102 | tubb5 | -0.025 |
| hoxb8a | 0.102 | CU467822.1 | -0.025 |
| BX005254.2 | 0.096 | marcksb | -0.025 |
| hoxc11b | 0.092 | tuba1c | -0.024 |
| hoxc6b | 0.091 | chd4a | -0.024 |
| si:ch73-380l10.2 | 0.085 | efnb3b | -0.024 |
| hoxc8a | 0.083 | zgc:165461 | -0.023 |
| hoxa11a | 0.075 | pcdh19 | -0.023 |
| ldlrad2 | 0.073 | mex3b | -0.023 |
| mov10b.1 | 0.071 | rtn1a | -0.023 |
| krt18a.1 | 0.070 | hmgb1b | -0.023 |
| XLOC-001964 | 0.070 | acin1a | -0.023 |
| mmp17b | 0.070 | zc4h2 | -0.023 |
| ednrab | 0.067 | si:ch211-152c2.3 | -0.022 |
| cdx4 | 0.067 | si:ch211-288g17.3 | -0.022 |
| BX248318.1 | 0.067 | ywhah | -0.022 |
| hoxc13a | 0.066 | myt1la | -0.022 |
| CU179656.1 | 0.065 | ppp1r14ba | -0.022 |
| tuba8l3 | 0.065 | stmn1b | -0.021 |
| arid3c | 0.064 | gatad2b | -0.021 |