| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxd10a | 0.634 | actc1b | -0.243 |
| her1 | 0.562 | pabpc4 | -0.224 |
| her12 | 0.524 | ckma | -0.224 |
| itm2cb | 0.517 | atp2a1 | -0.222 |
| BX005254.3 | 0.484 | ckmb | -0.219 |
| hoxa11b | 0.467 | ttn.2 | -0.217 |
| hoxd12a | 0.467 | mylpfa | -0.216 |
| pcdh8 | 0.462 | ak1 | -0.215 |
| hoxa10b | 0.461 | tmem38a | -0.210 |
| sall4 | 0.459 | eno1a | -0.210 |
| her7 | 0.432 | gapdh | -0.209 |
| hnrnpa0l | 0.430 | myl1 | -0.208 |
| ephb3 | 0.427 | aldoab | -0.204 |
| hoxa11a | 0.421 | tnnc2 | -0.203 |
| hoxd11a | 0.421 | acta1b | -0.201 |
| hes6 | 0.407 | mylz3 | -0.199 |
| tspan7 | 0.396 | pvalb1 | -0.198 |
| greb1 | 0.396 | pvalb2 | -0.197 |
| nid2a | 0.396 | neb | -0.197 |
| hoxc11a | 0.389 | gamt | -0.195 |
| h3f3a | 0.386 | si:ch73-367p23.2 | -0.194 |
| fn1b | 0.381 | fabp3 | -0.192 |
| ewsr1b | 0.371 | si:ch211-152c2.3 | -0.191 |
| LO016987.2 | 0.371 | ldb3b | -0.191 |
| hoxb7a | 0.370 | tnnt3a | -0.190 |
| hoxd3a | 0.367 | tpma | -0.189 |
| msgn1 | 0.363 | srl | -0.188 |
| apoc1 | 0.359 | ldb3a | -0.186 |
| hoxd9a | 0.358 | tnnt3b | -0.186 |
| XLOC-042222 | 0.354 | nme2b.2 | -0.185 |
| tbx16l | 0.352 | si:dkey-16p21.8 | -0.185 |
| hoxc3a | 0.350 | ank1a | -0.184 |
| zgc:56493 | 0.346 | cav3 | -0.183 |
| dut | 0.344 | hhatla | -0.182 |
| rarga | 0.343 | mybphb | -0.181 |