| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb9a | 0.176 | calb2b | -0.017 |
| LOC108190604 | 0.163 | pcp4l1 | -0.016 |
| hoxc9a | 0.153 | vsx1 | -0.016 |
| hoxd9a | 0.142 | foxg1b | -0.015 |
| LOC101886722 | 0.140 | stx3a | -0.015 |
| hoxa9a | 0.129 | nrxn3b | -0.014 |
| hoxa9b | 0.122 | gnb3a | -0.014 |
| hoxb7a | 0.122 | pcbp3 | -0.014 |
| hoxc3a | 0.118 | samsn1a | -0.014 |
| hoxc10a | 0.117 | lin7a | -0.014 |
| hoxa10b | 0.112 | ptmab | -0.014 |
| ednrab | 0.098 | otx2b | -0.013 |
| hoxc13a | 0.096 | nrn1lb | -0.013 |
| hoxa11b | 0.093 | si:ch1073-83n3.2 | -0.013 |
| hoxd12a | 0.090 | gnao1b | -0.013 |
| hoxd10a | 0.089 | apoa2 | -0.013 |
| hoxd11a | 0.088 | mpp6b | -0.013 |
| hoxb8a | 0.085 | gng13b | -0.013 |
| hoxb13a | 0.083 | rorab | -0.012 |
| BX005254.3 | 0.080 | actc1b | -0.012 |
| crestin | 0.080 | mdh1aa | -0.012 |
| XLOC-004959 | 0.080 | rorb | -0.012 |
| hoxd3a | 0.079 | cabp2a | -0.012 |
| BX248318.1 | 0.079 | cadm3 | -0.012 |
| mnx2b | 0.076 | si:ch73-256g18.2 | -0.012 |
| si:ch211-268b14.2 | 0.076 | prss59.2 | -0.012 |
| hoxc12b | 0.075 | neurod4 | -0.012 |
| pmp22a | 0.073 | ppp1r1b | -0.012 |
| cpt1cb | 0.073 | zgc:153409 | -0.012 |
| tuba8l3 | 0.073 | tspan9a | -0.011 |
| si:dkey-19a16.13 | 0.072 | nexn | -0.011 |
| col5a2a | 0.071 | mt-co2 | -0.011 |
| hoxc6b | 0.069 | COX3 | -0.011 |
| hoxc11a | 0.069 | znf395b | -0.011 |
| XLOC-033174 | 0.068 | rgs16 | -0.011 |