| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxd9a | 0.276 | fibina | -0.083 |
| hoxa10b | 0.263 | dlx5a | -0.068 |
| hoxb9a | 0.227 | col9a1a | -0.067 |
| hoxa11b | 0.222 | barx1 | -0.067 |
| hoxd10a | 0.209 | col9a2 | -0.063 |
| hoxd11a | 0.205 | foxc1b | -0.061 |
| hoxb10a | 0.203 | col2a1a | -0.061 |
| hoxc9a | 0.198 | six2a | -0.060 |
| hoxd12a | 0.178 | ecrg4a | -0.060 |
| hoxa13b | 0.167 | foxp4 | -0.059 |
| hoxc10a | 0.165 | six1a | -0.059 |
| cdx4 | 0.159 | dlx2a | -0.057 |
| hoxa9a | 0.152 | hpgd | -0.054 |
| hoxc11a | 0.147 | eya1 | -0.054 |
| hoxc3a | 0.139 | fxyd1 | -0.054 |
| cfd | 0.138 | dlx3b | -0.053 |
| BX005254.3 | 0.137 | otos | -0.053 |
| tbx5a | 0.136 | cldn11a | -0.052 |
| hoxa11a | 0.135 | cnmd | -0.052 |
| wu:fb97g03 | 0.132 | dlx4a | -0.052 |
| emilin2b | 0.129 | dlx1a | -0.051 |
| hoxd13a | 0.125 | nfia | -0.050 |
| hoxc6b | 0.125 | lhx6 | -0.049 |
| BX005254.2 | 0.123 | col9a3 | -0.048 |
| hoxb7a | 0.121 | foxf2a | -0.047 |
| hoxc8a | 0.118 | rarga | -0.047 |
| aplnr2 | 0.116 | LO018188.1 | -0.045 |
| apela | 0.111 | grem2b | -0.045 |
| hoxb1b | 0.111 | col11a2 | -0.044 |
| tuba8l2 | 0.108 | dlx4b | -0.044 |
| fbn2a.1 | 0.107 | igf2b | -0.042 |
| arid3c | 0.105 | gsc | -0.042 |
| fbln1 | 0.105 | ifitm1 | -0.041 |
| postnb | 0.103 | cdh11 | -0.041 |
| ccdc3a | 0.101 | rgs5a | -0.041 |