| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxd9a | 0.428 | fabp7a | -0.224 |
| hoxa10b | 0.393 | ppap2d | -0.159 |
| hoxa11b | 0.366 | efhd1 | -0.151 |
| hoxa9a | 0.342 | atp1a1b | -0.145 |
| hoxb9a | 0.338 | nfia | -0.142 |
| hoxc10a | 0.334 | itm2ba | -0.141 |
| hoxb10a | 0.327 | glula | -0.141 |
| hoxd10a | 0.312 | her6 | -0.141 |
| hoxc9a | 0.295 | ptn | -0.139 |
| hoxd3a | 0.281 | jun | -0.137 |
| hoxd11a | 0.266 | cd63 | -0.136 |
| hoxc11a | 0.243 | slc1a2b | -0.132 |
| hoxd12a | 0.236 | id1 | -0.130 |
| myt1b | 0.220 | qki2 | -0.129 |
| hoxa11a | 0.220 | CR848047.1 | -0.129 |
| stxbp1a | 0.205 | slc1a3b | -0.127 |
| stx1b | 0.201 | gpm6bb | -0.125 |
| pik3r3b | 0.197 | cxcl12a | -0.124 |
| LOC100537384 | 0.197 | crabp1a | -0.124 |
| snap25a | 0.196 | CR751602.2 | -0.122 |
| cplx2 | 0.195 | cspg5b | -0.122 |
| si:ch73-386h18.1 | 0.195 | si:ch211-66e2.5 | -0.121 |
| hoxc11b | 0.194 | si:dkey-85k7.7 | -0.121 |
| elavl3 | 0.191 | cyp26b1 | -0.121 |
| lhx1a | 0.188 | phox2bb | -0.120 |
| rbfox3a | 0.186 | CU467822.1 | -0.119 |
| sncb | 0.184 | fgfr2 | -0.119 |
| tmeff1b | 0.182 | klf6a | -0.118 |
| zc4h2 | 0.178 | zgc:165461 | -0.117 |
| cplx2l | 0.176 | slc6a1b | -0.116 |
| zfhx3 | 0.176 | rbp5 | -0.114 |
| hmgb3a | 0.175 | ca4a | -0.114 |
| vamp2 | 0.173 | msi1 | -0.114 |
| h3f3d | 0.172 | cdo1 | -0.113 |
| zgc:100920 | 0.172 | sox9a | -0.112 |