| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb7a | 0.338 | actc1b | -0.192 |
| hoxd9a | 0.326 | ttn.2 | -0.189 |
| hoxa10b | 0.298 | ttn.1 | -0.174 |
| hoxa9a | 0.294 | mylpfa | -0.169 |
| BX005254.3 | 0.283 | myl1 | -0.169 |
| itm2cb | 0.280 | klhl41b | -0.166 |
| hes6 | 0.280 | ak1 | -0.165 |
| cdx4 | 0.261 | tmem38a | -0.164 |
| hoxc3a | 0.261 | pabpc4 | -0.161 |
| BX001014.2 | 0.258 | eno1a | -0.160 |
| hoxa11b | 0.256 | ckma | -0.160 |
| hoxc8a | 0.252 | atp2a1 | -0.160 |
| wnt5b | 0.240 | tnnc2 | -0.159 |
| hoxc9a | 0.238 | acta1b | -0.159 |
| hoxb9a | 0.233 | gamt | -0.157 |
| rarga | 0.229 | tpma | -0.157 |
| hoxb10a | 0.228 | ckmb | -0.156 |
| her12 | 0.228 | aldoab | -0.156 |
| cx43.4 | 0.222 | mylz3 | -0.155 |
| fzd10 | 0.221 | gatm | -0.155 |
| hoxd10a | 0.220 | zgc:101853 | -0.153 |
| ptgdsb.1 | 0.220 | mybphb | -0.150 |
| ptmab | 0.218 | gapdh | -0.148 |
| nradd | 0.217 | ldb3a | -0.148 |
| fgf8a | 0.214 | desma | -0.146 |
| hoxd11a | 0.214 | neb | -0.145 |
| si:ch211-222l21.1 | 0.205 | pvalb2 | -0.145 |
| raraa | 0.201 | txlnbb | -0.144 |
| vox | 0.199 | si:ch73-367p23.2 | -0.144 |
| her7 | 0.199 | srl | -0.143 |
| hoxd12a | 0.199 | tnnt3b | -0.142 |
| hmgn6 | 0.199 | pvalb1 | -0.142 |
| hoxa11a | 0.197 | hhatla | -0.140 |
| si:ch73-281n10.2 | 0.194 | rbfox1l | -0.139 |
| hmgn7 | 0.193 | tpi1b | -0.139 |