| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxd9a | 0.484 | fabp7a | -0.250 |
| hoxa11b | 0.481 | atp1a1b | -0.180 |
| hoxd10a | 0.438 | gpm6bb | -0.178 |
| hoxa9b | 0.393 | zgc:165461 | -0.175 |
| hoxc10a | 0.380 | CU467822.1 | -0.174 |
| hoxb10a | 0.362 | actb2 | -0.166 |
| hoxd12a | 0.346 | CR848047.1 | -0.165 |
| hoxd11a | 0.328 | slc1a2b | -0.161 |
| hoxc11a | 0.313 | ppap2d | -0.160 |
| hoxa9a | 0.311 | efhd1 | -0.153 |
| hoxd3a | 0.281 | itm2ba | -0.150 |
| hoxa11a | 0.280 | nfia | -0.149 |
| hoxb9a | 0.274 | atp1b4 | -0.143 |
| cdx4 | 0.259 | glula | -0.143 |
| hoxc11b | 0.252 | qki2 | -0.141 |
| BX005254.3 | 0.228 | cd63 | -0.136 |
| sp5l | 0.190 | slc1a3b | -0.134 |
| hoxc12b | 0.186 | slc6a1b | -0.134 |
| pik3r3b | 0.186 | fgfr2 | -0.133 |
| hoxc9a | 0.185 | ptn | -0.133 |
| hoxb7a | 0.183 | msi1 | -0.131 |
| BX005254.2 | 0.182 | cspg5b | -0.127 |
| nradd | 0.176 | sox9a | -0.126 |
| mllt3 | 0.174 | actb1 | -0.125 |
| si:dkeyp-110a12.4 | 0.167 | klf6a | -0.125 |
| hoxc3a | 0.166 | cd82a | -0.124 |
| pou5f3 | 0.165 | CR751602.2 | -0.122 |
| h3f3d | 0.164 | cxcl12a | -0.122 |
| chrd | 0.164 | si:dkey-85k7.7 | -0.122 |
| hoxc13a | 0.162 | notch3 | -0.121 |
| apela | 0.155 | gpr37l1b | -0.120 |
| LOC100537384 | 0.155 | crabp1a | -0.120 |
| hoxd13a | 0.154 | si:ch1073-303k11.2 | -0.119 |
| lhx1a | 0.154 | cdo1 | -0.119 |
| kif26ab | 0.153 | cyp26b1 | -0.117 |