| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxa11b | 0.239 | celf2 | -0.031 |
| hoxd9a | 0.227 | si:ch211-288g17.3 | -0.031 |
| hoxb10a | 0.184 | cfl1 | -0.028 |
| hoxd11a | 0.184 | hnrnpa0b | -0.027 |
| hoxd10a | 0.178 | si:ch211-222l21.1 | -0.026 |
| hoxa9b | 0.176 | marcksb | -0.026 |
| hoxd12a | 0.170 | marcksl1b | -0.025 |
| hoxb9a | 0.149 | mex3b | -0.025 |
| hoxc11a | 0.141 | zgc:165461 | -0.025 |
| hoxa9a | 0.133 | hmgb3a | -0.024 |
| hoxc10a | 0.124 | hnrnpa1a | -0.024 |
| hoxb7a | 0.119 | nova2 | -0.024 |
| hoxc9a | 0.114 | pbx4 | -0.024 |
| BX005254.3 | 0.110 | mbd3b | -0.023 |
| hoxc11b | 0.096 | mdkb | -0.023 |
| hoxc12b | 0.090 | hnrnpub | -0.023 |
| hoxa13b | 0.081 | atrx | -0.023 |
| BX001014.2 | 0.080 | si:ch211-137a8.4 | -0.023 |
| hoxc6b | 0.077 | khdrbs1a | -0.023 |
| hoxa11a | 0.072 | chd4a | -0.023 |
| hoxc3a | 0.071 | hnrnpaba | -0.023 |
| hoxc12a | 0.066 | cirbpa | -0.023 |
| cdx4 | 0.065 | nat8l | -0.023 |
| hoxc13a | 0.063 | smarca4a | -0.022 |
| BX248318.1 | 0.063 | atp5mc3a | -0.022 |
| hoxb13a | 0.061 | top1l | -0.022 |
| hoxd13a | 0.060 | si:dkey-276j7.1 | -0.022 |
| BX005254.2 | 0.059 | syncrip | -0.022 |
| hoxd3a | 0.057 | smarce1 | -0.022 |
| LOC100535229 | 0.056 | aif1l | -0.022 |
| hoxb8a | 0.055 | tmpob | -0.022 |
| LOC108190371 | 0.054 | tuba1c | -0.022 |
| XLOC-041081 | 0.054 | ptmab | -0.021 |
| hoxc13b | 0.053 | actb2 | -0.021 |
| hoxc8a | 0.052 | h2afva | -0.020 |