| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb10a | 0.515 | NC-002333.4 | -0.130 |
| hoxd12a | 0.460 | stm | -0.124 |
| hoxd10a | 0.459 | akap12b | -0.115 |
| hoxa11b | 0.419 | s100a1 | -0.111 |
| hoxd11a | 0.401 | insb | -0.111 |
| hoxa9a | 0.384 | tbx16 | -0.108 |
| hoxd9a | 0.349 | si:ch211-152c2.3 | -0.106 |
| hoxa13b | 0.344 | metap2b | -0.104 |
| gdf11 | 0.335 | anp32e | -0.103 |
| hoxa9b | 0.334 | cd2bp2 | -0.103 |
| her12 | 0.329 | si:dkey-66i24.9 | -0.100 |
| hoxc13a | 0.327 | hnrnpa1b | -0.099 |
| hoxc11b | 0.322 | wu:fb97g03 | -0.096 |
| hoxc10a | 0.321 | acin1b | -0.096 |
| sall4 | 0.317 | srrm2 | -0.096 |
| hoxd13a | 0.315 | marcksl1b | -0.096 |
| hoxc13b | 0.314 | snrnp70 | -0.095 |
| hoxc11a | 0.306 | hnrnpm | -0.094 |
| lrrc17 | 0.293 | si:dkey-92i17.2 | -0.094 |
| hoxa11a | 0.287 | rbmx2 | -0.093 |
| her15.1 | 0.282 | aldob | -0.093 |
| fgf20a | 0.280 | fscn1a | -0.093 |
| hoxd3a | 0.272 | lrrc59 | -0.093 |
| BX005254.3 | 0.268 | COX7A2 | -0.092 |
| alpi.1 | 0.263 | hnrnpa1a | -0.092 |
| zgc:162939 | 0.258 | sec61b | -0.092 |
| pcp4a | 0.258 | polr2gl | -0.091 |
| XLOC-003690 | 0.258 | cdk11b | -0.091 |
| fgf4 | 0.258 | shisa2a | -0.091 |
| myclb | 0.256 | si:ch73-160h15.3 | -0.091 |
| her4.1 | 0.255 | chrd | -0.090 |
| XLOC-042222 | 0.253 | zmp:0000000624 | -0.090 |
| BX005254.2 | 0.252 | ssr1 | -0.089 |
| aplnr2 | 0.247 | pitx2 | -0.089 |
| hoxb7a | 0.246 | cactin | -0.089 |