| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxd10a | 0.351 | stm | -0.136 |
| gdf11 | 0.335 | si:ch211-152c2.3 | -0.118 |
| hoxd9a | 0.306 | NC-002333.4 | -0.116 |
| hoxb10a | 0.297 | tbx16 | -0.114 |
| fgf20a | 0.278 | ddx18 | -0.107 |
| hoxa10b | 0.272 | s100a1 | -0.107 |
| hoxa9a | 0.271 | si:dkey-66i24.9 | -0.104 |
| sall4 | 0.265 | chrd | -0.100 |
| her12 | 0.259 | pou5f3 | -0.099 |
| hoxa11b | 0.257 | cmtm6 | -0.098 |
| alpi.1 | 0.256 | shisa2a | -0.098 |
| her15.1 | 0.253 | cactin | -0.097 |
| hoxd12a | 0.251 | f11r.1 | -0.097 |
| fgf4 | 0.248 | zmp:0000000624 | -0.097 |
| BX005254.3 | 0.236 | polr2gl | -0.096 |
| hoxd11a | 0.236 | wu:fb97g03 | -0.096 |
| emid1 | 0.236 | acin1b | -0.096 |
| hoxb9a | 0.235 | anp32e | -0.096 |
| hoxc3a | 0.235 | ndr2 | -0.095 |
| hoxc10a | 0.229 | slu7 | -0.095 |
| fzd10 | 0.227 | fbl | -0.094 |
| her4.1 | 0.225 | pitx2 | -0.094 |
| si:ch211-129o18.4 | 0.224 | ddx4 | -0.093 |
| myclb | 0.224 | si:dkey-92i17.2 | -0.092 |
| lrrc17 | 0.224 | polr3gla | -0.092 |
| hnrnpa0l | 0.224 | cfl1l | -0.092 |
| hoxb7a | 0.220 | aldob | -0.092 |
| fam49al | 0.219 | srrm2 | -0.092 |
| hoxa9b | 0.218 | epcam | -0.091 |
| pcp4a | 0.218 | lyar | -0.091 |
| ewsr1b | 0.217 | bms1 | -0.091 |
| fn1a | 0.215 | metap2b | -0.090 |
| sst6 | 0.211 | si:ch73-160h15.3 | -0.090 |
| hoxc8a | 0.207 | srrt | -0.088 |
| tmem134 | 0.207 | si:ch211-173m16.2 | -0.088 |