| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb3a | 0.229 | lig1 | -0.025 |
| hoxd4a | 0.185 | slbp | -0.024 |
| hoxc4a | 0.157 | hmgb2a | -0.024 |
| hoxd9a | 0.146 | ccnd1 | -0.023 |
| hoxa3a | 0.144 | mcm6 | -0.023 |
| hoxb9a | 0.137 | rrm1 | -0.023 |
| hoxc3a | 0.132 | anp32e | -0.022 |
| hoxa9b | 0.122 | ahcy | -0.022 |
| hoxa9a | 0.118 | pcna | -0.022 |
| hoxb8a | 0.116 | mcm5 | -0.022 |
| pik3r3b | 0.107 | chaf1a | -0.021 |
| mab21l2 | 0.103 | mcm3 | -0.021 |
| nanos1 | 0.103 | si:ch211-114n24.6 | -0.021 |
| BX322661.2 | 0.102 | CABZ01005379.1 | -0.021 |
| hoxa10b | 0.100 | cdca7b | -0.021 |
| elavl4 | 0.099 | banf1 | -0.021 |
| hoxc8a | 0.098 | rfc4 | -0.020 |
| tmsb | 0.094 | mcm2 | -0.020 |
| hoxd11a | 0.093 | pax6a | -0.020 |
| hoxc9a | 0.092 | fzd5 | -0.019 |
| hapln1a | 0.090 | nutf2l | -0.019 |
| st8sia2 | 0.090 | XLOC-042899 | -0.019 |
| rarga | 0.089 | rorb | -0.019 |
| tlx2 | 0.088 | fbl | -0.019 |
| nova1 | 0.087 | dut | -0.019 |
| elavl3 | 0.087 | rfc2 | -0.019 |
| LOC108190371 | 0.087 | six3b | -0.019 |
| crabp1b | 0.086 | zgc:110540 | -0.019 |
| hoxd10a | 0.085 | rsl1d1 | -0.019 |
| zmp:0000001006 | 0.084 | dek | -0.018 |
| hoxb5a | 0.084 | nolc1 | -0.018 |
| hoxd12a | 0.084 | hells | -0.018 |
| ftr59 | 0.083 | msh2 | -0.018 |
| si:ch73-386h18.1 | 0.083 | dhfr | -0.018 |
| hoxc12b | 0.082 | rpa2 | -0.018 |