| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb9a | 0.345 | fabp7a | -0.275 |
| hoxd9a | 0.306 | atp1a1b | -0.205 |
| hoxa9a | 0.289 | itm2ba | -0.188 |
| hoxa10b | 0.281 | ppap2d | -0.188 |
| hoxa9b | 0.281 | qki2 | -0.187 |
| hoxc10a | 0.264 | cd63 | -0.186 |
| myt1b | 0.264 | id1 | -0.186 |
| pik3r3b | 0.264 | CU467822.1 | -0.185 |
| hoxa11b | 0.262 | ptn | -0.185 |
| elavl3 | 0.259 | gpm6bb | -0.184 |
| hoxd10a | 0.254 | efhd1 | -0.180 |
| hoxb10a | 0.250 | actb2 | -0.176 |
| snap25a | 0.239 | slc1a2b | -0.176 |
| hoxc3a | 0.235 | zgc:165461 | -0.173 |
| stx1b | 0.234 | glula | -0.171 |
| rbfox3a | 0.232 | nfia | -0.171 |
| tmeff1b | 0.232 | cd82a | -0.168 |
| stxbp1a | 0.231 | CR848047.1 | -0.168 |
| hoxc9a | 0.226 | si:ch211-66e2.5 | -0.167 |
| si:ch73-386h18.1 | 0.224 | her6 | -0.162 |
| elavl4 | 0.223 | slc1a3b | -0.158 |
| lhx1a | 0.223 | msi1 | -0.158 |
| zc4h2 | 0.222 | atp1b4 | -0.153 |
| syt2a | 0.215 | sox9a | -0.152 |
| hoxc11a | 0.215 | cdo1 | -0.152 |
| gng2 | 0.215 | fgfr2 | -0.151 |
| sncb | 0.214 | si:dkey-7j14.6 | -0.148 |
| hoxd11a | 0.214 | cspg5b | -0.147 |
| h3f3d | 0.214 | sparc | -0.147 |
| LOC100537384 | 0.213 | cxcl12a | -0.145 |
| nsg2 | 0.213 | gpr37l1b | -0.144 |
| cplx2 | 0.213 | sox2 | -0.144 |
| gng3 | 0.211 | gnai2a | -0.144 |
| hoxd12a | 0.208 | cx43 | -0.144 |
| rbfox1 | 0.208 | podxl | -0.143 |