| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb10a | 0.640 | gapdhs | -0.163 |
| hoxa10b | 0.569 | capns1a | -0.152 |
| hoxd10a | 0.556 | krt91 | -0.146 |
| hoxb7a | 0.551 | rplp2 | -0.138 |
| hoxc11b | 0.509 | anxa1a | -0.137 |
| LOC101882251 | 0.502 | anxa2a | -0.129 |
| hoxa11b | 0.496 | aqp3a | -0.129 |
| sp8b | 0.494 | krtt1c19e | -0.127 |
| nkx1.2la | 0.488 | eef1da | -0.127 |
| apela | 0.488 | col1a1b | -0.123 |
| hoxd11a | 0.483 | igfbp7 | -0.123 |
| BX005254.3 | 0.480 | si:dkey-33c14.3 | -0.121 |
| hoxb9a | 0.479 | cotl1 | -0.119 |
| cdx4 | 0.477 | s100v1 | -0.117 |
| hoxd9a | 0.467 | ak1 | -0.115 |
| hoxa9b | 0.461 | pvalb1 | -0.114 |
| emx3 | 0.435 | rbp4 | -0.112 |
| vcana | 0.433 | pvalb2 | -0.112 |
| crabp2a | 0.431 | s100a10b | -0.112 |
| ccdc3a | 0.413 | capgb | -0.112 |
| hoxc10a | 0.408 | meis1b | -0.112 |
| hoxc11a | 0.405 | col4a6 | -0.111 |
| sp5l | 0.404 | cxl34b.11 | -0.111 |
| rgs3a | 0.403 | ahcy | -0.111 |
| hoxc8a | 0.402 | col4a5 | -0.109 |
| hoxd13a | 0.401 | rps29 | -0.109 |
| mllt3 | 0.396 | aldh9a1a.1 | -0.108 |
| hoxc6b | 0.390 | sparc | -0.106 |
| insl5a | 0.381 | rhbg | -0.105 |
| hoxa9a | 0.375 | pycard | -0.104 |
| hoxc3a | 0.366 | col14a1b | -0.104 |
| emx2 | 0.364 | epgn | -0.102 |
| cdaa | 0.363 | si:ch211-39i22.1 | -0.102 |
| apoc1 | 0.359 | postnb | -0.100 |
| XLOC-042222 | 0.357 | ptmaa | -0.098 |