| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxd10a | 0.531 | akap12b | -0.138 |
| hoxc11b | 0.475 | ttn.1 | -0.131 |
| hoxc11a | 0.469 | si:ch211-152c2.3 | -0.131 |
| hoxb10a | 0.467 | ttn.2 | -0.130 |
| hoxa11a | 0.419 | stm | -0.121 |
| her12 | 0.409 | nr6a1a | -0.120 |
| hoxa13b | 0.408 | actc1b | -0.116 |
| itm2cb | 0.404 | FQ323156.1 | -0.115 |
| hoxd11a | 0.392 | fxr2 | -0.115 |
| hoxa11b | 0.392 | thrap3a | -0.108 |
| hoxa10b | 0.391 | gatm | -0.107 |
| her1 | 0.383 | NC-002333.4 | -0.107 |
| gdf11 | 0.358 | klhl41b | -0.105 |
| hoxc12b | 0.348 | myhz1.1 | -0.103 |
| sall4 | 0.343 | nme2b.2 | -0.103 |
| hoxc10a | 0.342 | rbm24a | -0.101 |
| rarga | 0.337 | pabpc4 | -0.099 |
| fgf3 | 0.335 | eno1a | -0.099 |
| hoxd13a | 0.334 | tnni2b.1 | -0.099 |
| hoxc13b | 0.334 | fscn1a | -0.097 |
| fbln1 | 0.333 | myog | -0.095 |
| thbs2a | 0.330 | aldoab | -0.095 |
| hoxd3a | 0.329 | COX7A2 | -0.094 |
| her7 | 0.322 | flncb | -0.094 |
| zgc:162939 | 0.316 | si:ch211-131k2.3 | -0.094 |
| greb1 | 0.308 | zmp:0000000624 | -0.093 |
| hoxc13a | 0.306 | efhd1 | -0.093 |
| hoxd9a | 0.295 | tnnc2 | -0.093 |
| bmp2a | 0.292 | tpma | -0.093 |
| hes6 | 0.291 | ldb3a | -0.093 |
| BX005254.3 | 0.285 | myhz1.2 | -0.092 |
| ephb3 | 0.280 | zgc:101853 | -0.092 |
| cyp26a1 | 0.280 | rbfox1l | -0.092 |
| nid2a | 0.277 | acta1b | -0.092 |
| hoxc12a | 0.272 | tmem38a | -0.092 |