| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxd13a | 0.349 | fibina | -0.080 |
| hoxa13b | 0.339 | foxp4 | -0.074 |
| hoxd11a | 0.315 | dlx5a | -0.063 |
| hoxa11b | 0.314 | cd248b | -0.062 |
| tbx5a | 0.271 | socs3a | -0.057 |
| hoxd9a | 0.269 | cldn11a | -0.056 |
| hoxa10b | 0.257 | hpgd | -0.055 |
| hoxc11a | 0.235 | dlx2a | -0.055 |
| hoxd10a | 0.232 | barx1 | -0.054 |
| hoxc11b | 0.230 | six2a | -0.054 |
| hoxc12b | 0.209 | cdh11 | -0.052 |
| hoxa9b | 0.178 | igf2b | -0.052 |
| hoxa11a | 0.173 | eya1 | -0.050 |
| hoxc12a | 0.170 | dlx3b | -0.049 |
| clic2 | 0.169 | foxf2a | -0.048 |
| rxfp2a | 0.169 | dlx4a | -0.048 |
| shhb | 0.168 | fxyd1 | -0.047 |
| shox2 | 0.157 | twist2 | -0.046 |
| kazald2 | 0.154 | tuba8l3 | -0.046 |
| hoxc10a | 0.153 | nfia | -0.045 |
| tuba8l2 | 0.145 | dlx1a | -0.045 |
| emilin3a | 0.144 | lhx6 | -0.045 |
| col8a2 | 0.143 | vasna | -0.044 |
| ppp1r1c | 0.143 | crip1 | -0.044 |
| apela | 0.140 | alx1 | -0.044 |
| crabp1b | 0.134 | prss35 | -0.042 |
| cyp1b1 | 0.126 | pbx1b | -0.042 |
| hoxa13a | 0.123 | celf2 | -0.042 |
| crabp2a | 0.121 | ackr3b | -0.042 |
| hand2 | 0.120 | dlx4b | -0.042 |
| samd10a | 0.117 | adgrl2a | -0.042 |
| tbx3a | 0.116 | grem2b | -0.042 |
| her7 | 0.114 | mn1a | -0.041 |
| si:dkey-202e22.2 | 0.114 | ctgfb | -0.041 |
| tbx15 | 0.114 | ociad2 | -0.041 |