| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb10a | 0.550 | stm | -0.107 |
| hoxd13a | 0.549 | NC-002333.4 | -0.102 |
| hoxd10a | 0.523 | si:ch211-152c2.3 | -0.100 |
| hoxc13a | 0.491 | s100a1 | -0.094 |
| hoxa11a | 0.471 | insb | -0.092 |
| hoxa10b | 0.460 | akap12b | -0.089 |
| hoxc13b | 0.452 | metap2b | -0.086 |
| hoxa13b | 0.450 | marcksl1b | -0.086 |
| gdf11 | 0.444 | tbx16 | -0.085 |
| hoxd11a | 0.436 | anp32e | -0.084 |
| lrrc17 | 0.432 | wu:fb97g03 | -0.083 |
| her12 | 0.424 | fscn1a | -0.081 |
| hoxc11b | 0.405 | zfand5a | -0.080 |
| pcp4a | 0.396 | tdgf1 | -0.080 |
| hoxc11a | 0.395 | COX7A2 | -0.080 |
| hoxa11b | 0.389 | acin1b | -0.080 |
| sall4 | 0.385 | shisa2a | -0.079 |
| hoxa13a | 0.375 | chrd | -0.078 |
| fgf20a | 0.359 | pitx2 | -0.078 |
| hoxa9a | 0.356 | si:ch73-160h15.3 | -0.077 |
| fgf4 | 0.354 | ell2 | -0.076 |
| her15.1 | 0.353 | cmtm6 | -0.076 |
| alpi.1 | 0.351 | si:dkey-92i17.2 | -0.075 |
| fgf3 | 0.351 | si:dkey-66i24.9 | -0.075 |
| zgc:162939 | 0.347 | ISCU | -0.074 |
| hoxc12b | 0.341 | epcam | -0.074 |
| hoxb13a | 0.335 | nr6a1a | -0.073 |
| XLOC-042222 | 0.332 | ndr2 | -0.073 |
| myclb | 0.330 | hnrnpa1a | -0.073 |
| fzd10 | 0.317 | ddx4 | -0.073 |
| her4.1 | 0.311 | pou5f3 | -0.073 |
| si:dkeyp-110a12.4 | 0.305 | aldob | -0.072 |
| hoxc10a | 0.304 | zmp:0000000624 | -0.072 |
| hoxd9a | 0.303 | add3b | -0.072 |
| BX005254.3 | 0.301 | elovl6 | -0.071 |