| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxc11b | 0.305 | hbae1.1 | -0.061 |
| hoxd13a | 0.302 | hbae3 | -0.061 |
| hoxa11b | 0.296 | blvrb | -0.059 |
| hoxa10b | 0.242 | hbae1.3 | -0.058 |
| hoxd9a | 0.241 | hbbe2 | -0.058 |
| hoxd11a | 0.221 | hbbe1.3 | -0.058 |
| hoxc12b | 0.220 | slc4a1a | -0.057 |
| hoxa9a | 0.218 | hemgn | -0.055 |
| hoxc11a | 0.214 | cahz | -0.055 |
| hoxa11a | 0.213 | hbbe1.1 | -0.054 |
| hoxa9b | 0.212 | alas2 | -0.052 |
| hoxb10a | 0.201 | prdx2 | -0.050 |
| hoxd10a | 0.200 | zgc:163057 | -0.049 |
| hoxb9a | 0.190 | hbbe1.2 | -0.049 |
| hoxa13b | 0.185 | nmt1b | -0.049 |
| hoxc10a | 0.172 | tspo | -0.048 |
| postnb | 0.159 | nt5c2l1 | -0.048 |
| hoxb7a | 0.156 | epb41b | -0.047 |
| hoxc13a | 0.155 | urod | -0.044 |
| aqp8a.1 | 0.154 | gpx1a | -0.043 |
| hoxc9a | 0.153 | hdr | -0.043 |
| BX005254.3 | 0.148 | tmem14ca | -0.043 |
| stab2 | 0.148 | tfr1a | -0.040 |
| hoxd3a | 0.142 | tmod4 | -0.040 |
| dab2 | 0.138 | hbae5 | -0.040 |
| hoxc13b | 0.137 | si:ch211-227m13.1 | -0.040 |
| ldlrad2 | 0.135 | fth1a | -0.040 |
| XLOC-042222 | 0.132 | TCIM (1 of many) | -0.040 |
| mrc1a | 0.130 | hbbe3 | -0.039 |
| il13ra2 | 0.130 | gata1a | -0.038 |
| hoxc3a | 0.128 | si:ch73-248e21.7 | -0.038 |
| sost | 0.127 | si:ch211-207c6.2 | -0.038 |
| etv2 | 0.126 | rfesd | -0.038 |
| her12 | 0.125 | sptb | -0.038 |
| cd99 | 0.123 | plac8l1 | -0.037 |