| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| eomesa | 0.307 | mab21l2 | -0.041 |
| tbr1b | 0.256 | cpn1 | -0.038 |
| foxg1a | 0.215 | nova1 | -0.038 |
| tbr1a | 0.209 | bhmt | -0.038 |
| dmrta2 | 0.184 | hoxb3a | -0.037 |
| fezf2 | 0.176 | pmp22a | -0.037 |
| bhlha9 | 0.148 | sb:cb81 | -0.036 |
| neurod6b | 0.147 | rbfox1 | -0.035 |
| im:7150988 | 0.139 | krt18b | -0.034 |
| emx1 | 0.138 | si:ch73-386h18.1 | -0.034 |
| sp6 | 0.136 | twist1a | -0.034 |
| LOC101882251 | 0.132 | col5a1 | -0.034 |
| sp8a | 0.132 | meis2b | -0.034 |
| dlx3b | 0.127 | irx1a | -0.033 |
| zgc:123217 | 0.121 | msna | -0.033 |
| krt97 | 0.118 | tgfbi | -0.033 |
| si:dkey-248g15.3 | 0.118 | pou5f3 | -0.032 |
| znf296 | 0.118 | cd81a | -0.031 |
| efnb2a | 0.116 | crabp2b | -0.031 |
| ek1 | 0.116 | hbae3 | -0.031 |
| sp8b | 0.115 | irx5a | -0.031 |
| CDHR1 (1 of many) | 0.111 | si:ch211-57n23.4 | -0.031 |
| tbx21 | 0.110 | snai1a | -0.031 |
| si:ch211-264f5.6 | 0.108 | si:ch211-286o17.1 | -0.031 |
| r3hdm1 | 0.107 | colec12 | -0.030 |
| fezf1 | 0.105 | hbbe1.3 | -0.030 |
| lhx2b | 0.105 | irx3b | -0.030 |
| sipa1l2 | 0.104 | lpar1 | -0.030 |
| bcl11ba | 0.103 | pax7a | -0.030 |
| CU467822.1 | 0.101 | polr3gla | -0.030 |
| epcam | 0.098 | reck | -0.030 |
| si:dkey-19b23.12 | 0.098 | tbx16 | -0.030 |
| mslna | 0.096 | zeb2a | -0.030 |
| si:dkey-92i15.4 | 0.096 | meis2a | -0.030 |
| cldn7b | 0.095 | col5a2a | -0.029 |