| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxd10a | 0.510 | stm | -0.111 |
| hoxb10a | 0.485 | NC-002333.4 | -0.105 |
| hoxd12a | 0.436 | marcksl1b | -0.100 |
| fgf20a | 0.407 | si:ch211-152c2.3 | -0.098 |
| hoxa11b | 0.402 | s100a1 | -0.092 |
| hoxa10b | 0.401 | tbx16 | -0.091 |
| hoxd9a | 0.392 | metap2b | -0.088 |
| gdf11 | 0.378 | wu:fb97g03 | -0.086 |
| hoxc11b | 0.373 | si:dkey-66i24.9 | -0.085 |
| her12 | 0.364 | pitx2 | -0.084 |
| hoxa9a | 0.354 | epcam | -0.083 |
| fgf4 | 0.331 | polr2gl | -0.082 |
| alpi.1 | 0.331 | fscn1a | -0.082 |
| sall4 | 0.331 | chrd | -0.082 |
| lrrc17 | 0.325 | shisa2a | -0.080 |
| pcp4a | 0.324 | insb | -0.079 |
| BX005254.2 | 0.316 | aldob | -0.078 |
| hoxc10a | 0.311 | zmp:0000000624 | -0.077 |
| hoxa11a | 0.306 | pou5f3 | -0.077 |
| BX005254.3 | 0.301 | anp32e | -0.076 |
| her15.1 | 0.296 | cfl1l | -0.075 |
| her4.1 | 0.292 | hnrnpa1a | -0.075 |
| fzd10 | 0.292 | ndr2 | -0.075 |
| si:ch211-129o18.4 | 0.291 | si:ch73-160h15.3 | -0.075 |
| myclb | 0.290 | ddx4 | -0.075 |
| fgf3 | 0.289 | akap12b | -0.074 |
| hoxb7a | 0.283 | sfpq | -0.074 |
| hoxc11a | 0.277 | si:dkey-92i17.2 | -0.074 |
| hoxc3a | 0.273 | hnrnpa1b | -0.073 |
| sst6 | 0.270 | si:ch211-243g18.2 | -0.073 |
| parvb | 0.269 | COX7A2 | -0.073 |
| aplnr2 | 0.267 | nr6a1a | -0.073 |
| hoxb9a | 0.265 | cmtm6 | -0.073 |
| hoxa9b | 0.264 | f11r.1 | -0.073 |
| htr5aa | 0.259 | klf17 | -0.072 |