| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxa11b | 0.279 | hbae3 | -0.074 |
| hoxd9a | 0.273 | hbae1.1 | -0.074 |
| hoxd10a | 0.258 | hbbe2 | -0.073 |
| hoxa10b | 0.254 | hbbe1.3 | -0.072 |
| hoxb10a | 0.228 | hbae1.3 | -0.071 |
| hoxa9a | 0.222 | hbbe1.1 | -0.069 |
| hoxd12a | 0.221 | cahz | -0.066 |
| hoxc11a | 0.211 | hemgn | -0.064 |
| hoxc10a | 0.202 | blvrb | -0.063 |
| hoxa11a | 0.198 | prdx2 | -0.063 |
| BX005254.3 | 0.181 | tspo | -0.061 |
| hoxc11b | 0.180 | hbbe1.2 | -0.061 |
| hoxb7a | 0.179 | alas2 | -0.059 |
| hoxb9a | 0.172 | slc4a1a | -0.057 |
| hoxc3a | 0.165 | zgc:163057 | -0.056 |
| hoxa9b | 0.155 | nt5c2l1 | -0.054 |
| hoxc9a | 0.153 | si:ch211-250g4.3 | -0.052 |
| tbxtb | 0.147 | epb41b | -0.051 |
| vox | 0.141 | nmt1b | -0.050 |
| etv2 | 0.134 | si:ch211-207c6.2 | -0.050 |
| sall4 | 0.133 | creg1 | -0.049 |
| mnx1 | 0.132 | plac8l1 | -0.048 |
| fbln1 | 0.132 | gpx1a | -0.047 |
| greb1 | 0.128 | tmod4 | -0.046 |
| her12 | 0.127 | fth1a | -0.044 |
| hoxd13a | 0.125 | hdr | -0.044 |
| ndnf | 0.125 | hbae5 | -0.042 |
| LOC110438550 | 0.123 | tmem14ca | -0.041 |
| her7 | 0.120 | TCIM (1 of many) | -0.040 |
| her1 | 0.120 | si:ch211-227m13.1 | -0.040 |
| isl2a | 0.119 | sptb | -0.040 |
| fgf10b | 0.118 | tfr1a | -0.039 |
| XLOC-042222 | 0.118 | si:dkey-240n22.3 | -0.039 |
| lsp1 | 0.117 | klf1 | -0.039 |
| lin28a | 0.117 | urod | -0.039 |