| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxd10a | 0.361 | NC-002333.4 | -0.143 |
| hoxa11b | 0.359 | stm | -0.141 |
| hoxb10a | 0.329 | anp32e | -0.132 |
| hoxb9a | 0.328 | fbl | -0.128 |
| hoxd9a | 0.326 | hnrnpa1b | -0.127 |
| hoxa10b | 0.321 | hnrnpa1a | -0.127 |
| hoxd11a | 0.311 | s100a1 | -0.125 |
| hoxd12a | 0.304 | hnrnpub | -0.121 |
| hoxa11a | 0.290 | si:ch211-152c2.3 | -0.119 |
| hoxc11b | 0.273 | hnrnpm | -0.117 |
| hoxa9b | 0.260 | tbx16 | -0.116 |
| hoxd13a | 0.259 | bms1 | -0.115 |
| hoxc11a | 0.255 | ncl | -0.114 |
| gdf11 | 0.247 | ilf3b | -0.113 |
| hoxc13a | 0.245 | lyar | -0.113 |
| sall4 | 0.233 | si:dkey-66i24.9 | -0.113 |
| hoxc13b | 0.232 | insb | -0.112 |
| hoxa13a | 0.229 | rbm4.3 | -0.112 |
| hoxd3a | 0.229 | metap2b | -0.112 |
| hoxa9a | 0.226 | npm1a | -0.111 |
| hoxa13b | 0.220 | snrnp70 | -0.110 |
| alpi.1 | 0.217 | brd3a | -0.110 |
| fn1a | 0.212 | dkc1 | -0.110 |
| ptgdsb.1 | 0.212 | hspb1 | -0.110 |
| hoxc3a | 0.207 | srrm2 | -0.110 |
| XLOC-001964 | 0.207 | srsf1a | -0.109 |
| gulp1a | 0.206 | gnl3 | -0.109 |
| fbn2b | 0.205 | srrt | -0.109 |
| fgf20a | 0.204 | hnrnpd | -0.108 |
| XLOC-042222 | 0.203 | safb | -0.107 |
| her12 | 0.199 | acin1b | -0.107 |
| clu | 0.199 | nop58 | -0.107 |
| hoxb13a | 0.199 | hdgfl2 | -0.107 |
| parvb | 0.198 | zgc:110425 | -0.107 |
| fgf4 | 0.196 | zmp:0000000624 | -0.107 |