| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxd9a | 0.393 | fabp7a | -0.208 |
| hoxa11b | 0.385 | actb2 | -0.177 |
| hoxd10a | 0.380 | id1 | -0.172 |
| hoxa10b | 0.380 | atp1a1b | -0.168 |
| hoxa9b | 0.334 | gpm6bb | -0.158 |
| hoxc11a | 0.321 | mdka | -0.157 |
| hoxd11a | 0.311 | zgc:165461 | -0.156 |
| hoxa9a | 0.296 | XLOC-003690 | -0.153 |
| hoxb10a | 0.279 | msi1 | -0.148 |
| hoxd12a | 0.276 | cd63 | -0.147 |
| hoxb9a | 0.265 | cd82a | -0.144 |
| hoxd3a | 0.264 | sparc | -0.143 |
| pik3r3b | 0.256 | notch3 | -0.140 |
| hoxa11a | 0.248 | her15.1 | -0.140 |
| hoxc11b | 0.244 | sox3 | -0.137 |
| myt1b | 0.232 | qki2 | -0.136 |
| snap25a | 0.221 | CU467822.1 | -0.135 |
| hoxc12b | 0.219 | atp1b4 | -0.134 |
| stx1b | 0.217 | itm2ba | -0.133 |
| rbfox3a | 0.213 | ppap2d | -0.131 |
| elavl4 | 0.209 | CR848047.1 | -0.129 |
| LOC100537384 | 0.208 | fosab | -0.128 |
| lhx1a | 0.202 | msna | -0.125 |
| pou2f2a | 0.202 | cldn5a | -0.124 |
| elavl3 | 0.202 | nfia | -0.124 |
| stxbp1a | 0.200 | sdc4 | -0.123 |
| nsg2 | 0.199 | efhd1 | -0.123 |
| zc4h2 | 0.199 | ptn | -0.121 |
| gng3 | 0.199 | btg2 | -0.121 |
| cplx2 | 0.197 | her4.1 | -0.121 |
| sncb | 0.196 | her4.2 | -0.119 |
| vamp2 | 0.195 | glula | -0.117 |
| hoxc12a | 0.195 | sox2 | -0.116 |
| syt2a | 0.194 | fgfr3 | -0.113 |
| olfm1b | 0.193 | her6 | -0.112 |