| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxa9b | 0.230 | celf2 | -0.054 |
| hoxa10b | 0.227 | tuba1c | -0.051 |
| hoxd10a | 0.219 | marcksl1a | -0.050 |
| hoxd11a | 0.210 | nova2 | -0.050 |
| hoxb10a | 0.200 | mdkb | -0.045 |
| hoxb9a | 0.200 | CR383676.1 | -0.044 |
| hoxa9a | 0.192 | gpm6aa | -0.043 |
| hoxa11b | 0.184 | marcksl1b | -0.042 |
| hoxb7a | 0.177 | si:dkey-276j7.1 | -0.042 |
| hoxc9a | 0.168 | rtn1a | -0.042 |
| BX005254.3 | 0.162 | tubb5 | -0.040 |
| cdx4 | 0.160 | hmgb3a | -0.040 |
| hoxd12a | 0.156 | mex3b | -0.038 |
| hoxc11a | 0.148 | zc4h2 | -0.038 |
| hoxc10a | 0.139 | mbd3b | -0.038 |
| BX001014.2 | 0.134 | fabp3 | -0.037 |
| hoxc6b | 0.117 | hmgb1a | -0.036 |
| hoxc8a | 0.114 | stmn1b | -0.036 |
| hoxc3a | 0.111 | hnrnpa0l | -0.035 |
| hoxa11a | 0.105 | cspg5a | -0.035 |
| BX005254.2 | 0.104 | ptmaa | -0.034 |
| ptgs1 | 0.100 | cd99l2 | -0.034 |
| nradd | 0.098 | hmgb1b | -0.034 |
| hoxc11b | 0.095 | atp5mc3a | -0.034 |
| cdx1a | 0.084 | h3f3a | -0.034 |
| wnt5b | 0.076 | ywhabl | -0.034 |
| si:ch211-199g17.2 | 0.076 | ppiab | -0.033 |
| fermt1 | 0.075 | mt-co2 | -0.033 |
| mir196b | 0.072 | si:ch211-288g17.3 | -0.033 |
| zgc:171775 | 0.071 | efnb3b | -0.033 |
| arid3c | 0.067 | zgc:165461 | -0.033 |
| hoxc12b | 0.067 | zgc:114188 | -0.032 |
| apoc1 | 0.066 | ckbb | -0.031 |
| tagln2 | 0.066 | ywhah | -0.031 |
| krt18a.1 | 0.065 | gng3 | -0.031 |