| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxd10a | 0.389 | hbae1.1 | -0.161 |
| hoxa11b | 0.370 | hbae3 | -0.156 |
| hoxc9a | 0.316 | hbbe1.3 | -0.155 |
| hoxb9a | 0.312 | hbae1.3 | -0.154 |
| hoxb10a | 0.308 | hbbe2 | -0.153 |
| hoxa10b | 0.302 | hbbe1.1 | -0.148 |
| hoxa9a | 0.296 | cahz | -0.147 |
| hoxb7a | 0.295 | blvrb | -0.143 |
| hoxd11a | 0.273 | hemgn | -0.139 |
| hoxc3a | 0.273 | prdx2 | -0.139 |
| dab2 | 0.259 | hbbe1.2 | -0.136 |
| hoxc11a | 0.256 | alas2 | -0.129 |
| hoxa11a | 0.251 | slc4a1a | -0.128 |
| stab2 | 0.242 | tspo | -0.125 |
| hoxd12a | 0.241 | gpx1a | -0.122 |
| hoxa9b | 0.239 | si:ch211-250g4.3 | -0.121 |
| gpr182 | 0.237 | nt5c2l1 | -0.120 |
| etv2 | 0.236 | zgc:163057 | -0.117 |
| hoxc11b | 0.236 | epb41b | -0.115 |
| hoxc10a | 0.236 | si:ch211-207c6.2 | -0.109 |
| mrc1a | 0.232 | creg1 | -0.109 |
| mnx1 | 0.223 | fth1a | -0.109 |
| hoxd3a | 0.222 | nmt1b | -0.108 |
| postnb | 0.219 | tmod4 | -0.102 |
| krt18a.1 | 0.213 | plac8l1 | -0.102 |
| tpm4a | 0.213 | tmem14ca | -0.094 |
| dusp5 | 0.212 | klf1 | -0.091 |
| cfd | 0.209 | sptb | -0.090 |
| ctgfa | 0.206 | tfr1a | -0.088 |
| il13ra2 | 0.205 | hbae5 | -0.084 |
| BX005254.3 | 0.203 | add2 | -0.084 |
| marcksl1a | 0.202 | si:ch211-227m13.1 | -0.082 |
| tpcn3 | 0.202 | si:dkey-240n22.3 | -0.082 |
| hoxc6b | 0.201 | rfesd | -0.082 |
| lyve1b | 0.201 | ucp3 | -0.081 |