| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxa10b | 0.484 | fabp7a | -0.259 |
| hoxd10a | 0.443 | slc1a2b | -0.184 |
| hoxa9b | 0.428 | atp1a1b | -0.183 |
| hoxa11b | 0.425 | ppap2d | -0.180 |
| hoxc10a | 0.393 | efhd1 | -0.168 |
| hoxb10a | 0.371 | nfia | -0.165 |
| hoxa9a | 0.358 | CR848047.1 | -0.161 |
| hoxb9a | 0.352 | itm2ba | -0.160 |
| hoxd11a | 0.323 | glula | -0.159 |
| hoxd3a | 0.306 | ptn | -0.158 |
| hoxc11a | 0.298 | qki2 | -0.157 |
| hoxc9a | 0.280 | gpm6bb | -0.155 |
| hoxd12a | 0.279 | zgc:165461 | -0.154 |
| hoxa11a | 0.250 | slc1a3b | -0.153 |
| hoxc11b | 0.249 | CU467822.1 | -0.148 |
| myt1b | 0.225 | fgfr2 | -0.146 |
| pik3r3b | 0.222 | cd63 | -0.145 |
| si:ch73-386h18.1 | 0.205 | jun | -0.145 |
| elavl3 | 0.204 | her6 | -0.141 |
| LOC100537384 | 0.204 | cspg5b | -0.140 |
| h3f3d | 0.203 | si:ch211-66e2.5 | -0.140 |
| hmgn6 | 0.197 | id1 | -0.139 |
| robo3 | 0.193 | atp1b4 | -0.139 |
| lhx1a | 0.184 | slc6a1b | -0.138 |
| BX005254.3 | 0.183 | klf6a | -0.137 |
| hoxc3a | 0.181 | cdo1 | -0.136 |
| tmeff1b | 0.181 | sox9a | -0.135 |
| ptmab | 0.179 | gpr37l1b | -0.135 |
| scrt2 | 0.175 | si:dkey-85k7.7 | -0.134 |
| thsd7aa | 0.173 | msi1 | -0.134 |
| cirbpb | 0.171 | si:ch1073-303k11.2 | -0.134 |
| nhlh2 | 0.170 | cxcl12a | -0.134 |
| zc4h2 | 0.170 | gnai2a | -0.133 |
| scrt1a | 0.169 | crabp1a | -0.129 |
| hoxb7a | 0.165 | CR751602.2 | -0.128 |