| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxc9a | 0.373 | rarga | -0.120 |
| hoxb10a | 0.340 | col9a1a | -0.112 |
| hoxa9a | 0.284 | col2a1a | -0.105 |
| hoxc8a | 0.271 | col9a2 | -0.100 |
| hoxc3a | 0.263 | foxc1b | -0.096 |
| hoxb7a | 0.252 | fgfbp2b | -0.093 |
| emilin2b | 0.252 | ecrg4a | -0.092 |
| hoxb8a | 0.242 | six1a | -0.089 |
| cfd | 0.231 | dlx5a | -0.084 |
| hoxc10a | 0.230 | col9a3 | -0.084 |
| hoxa9b | 0.227 | col11a2 | -0.081 |
| hoxd9a | 0.226 | fibina | -0.080 |
| aplnr2 | 0.218 | gsc | -0.079 |
| hoxa10b | 0.215 | sox9a | -0.079 |
| hoxc6b | 0.215 | VIT | -0.075 |
| hoxc11a | 0.207 | six2a | -0.074 |
| tmem88b | 0.198 | cnmd | -0.074 |
| hoxa11b | 0.196 | LO018188.1 | -0.074 |
| BX001014.2 | 0.195 | dlx2a | -0.072 |
| hoxb1b | 0.194 | tgfb3 | -0.072 |
| BX469925.3 | 0.193 | hpgd | -0.070 |
| tuba8l2 | 0.192 | dlx3b | -0.068 |
| cdx4 | 0.189 | cyp26b1 | -0.068 |
| hoxa11a | 0.185 | col8a2 | -0.066 |
| si:dkey-195m11.8 | 0.178 | cldn11a | -0.065 |
| hoxd10a | 0.177 | KCTD15 | -0.065 |
| postnb | 0.176 | otos | -0.065 |
| col5a2a | 0.166 | LOC101883507 | -0.065 |
| BX005254.3 | 0.164 | dlx4a | -0.065 |
| clec19a | 0.161 | fxyd1 | -0.064 |
| wu:fb97g03 | 0.160 | adgrl2a | -0.064 |
| fbn2a.1 | 0.160 | rgs5a | -0.063 |
| si:ch211-286o17.1 | 0.155 | phlda3 | -0.063 |
| si:dkey-238c7.16 | 0.154 | dlx1a | -0.063 |
| fbln1 | 0.154 | nfia | -0.063 |