| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb8a | 0.575 | stm | -0.114 |
| hoxb7a | 0.446 | agr2 | -0.107 |
| hoxc3a | 0.438 | si:ch211-243g18.2 | -0.107 |
| hoxc8a | 0.401 | col2a1a | -0.107 |
| hoxc9a | 0.384 | otomp | -0.103 |
| hoxd9a | 0.265 | col9a2 | -0.101 |
| hs3st3b1a | 0.262 | col11a1a | -0.094 |
| cxcr4b | 0.260 | atp1b1a | -0.093 |
| hoxa9a | 0.259 | tbx2b | -0.093 |
| hoxb6a | 0.258 | sox10 | -0.090 |
| hoxc1a | 0.245 | col9a1a | -0.088 |
| runx3 | 0.239 | si:dkey-98f17.3 | -0.082 |
| met | 0.236 | cldna | -0.082 |
| clcf1 | 0.230 | bricd5 | -0.081 |
| hoxc10a | 0.216 | sparc | -0.080 |
| hoxc6a | 0.215 | col9a3 | -0.080 |
| hoxb3a | 0.212 | atp1a1a.4 | -0.080 |
| her12 | 0.211 | col2a1b | -0.079 |
| CT573139.1 | 0.205 | ephb3 | -0.077 |
| si:dkey-1h24.2 | 0.199 | FP017215.1 | -0.077 |
| hpse2 | 0.196 | tbx2a | -0.076 |
| hoxb10a | 0.195 | AL954322.2 | -0.076 |
| sash1a | 0.194 | col9a1b | -0.076 |
| LOC559637 | 0.190 | efhd1 | -0.076 |
| XLOC-016165 | 0.190 | slc4a4b | -0.076 |
| sdk1b | 0.187 | matn4 | -0.075 |
| fndc1 | 0.183 | hmga2 | -0.075 |
| LOC101886896 | 0.178 | si:dkey-16l2.17 | -0.074 |
| arid3b | 0.178 | mdka | -0.074 |
| hoxa9b | 0.177 | wfdc2 | -0.071 |
| tfap2c | 0.173 | acbd7 | -0.071 |
| XLOC-013964 | 0.172 | pax2a | -0.071 |
| anxa4 | 0.171 | six1a | -0.071 |
| cth1 | 0.167 | si:ch211-80h18.1 | -0.070 |
| gdf10a | 0.167 | sox6 | -0.070 |