| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb7a | 0.336 | hbae1.1 | -0.157 |
| hoxc9a | 0.327 | prdx2 | -0.153 |
| hoxa9a | 0.320 | hbae3 | -0.152 |
| hoxd9a | 0.312 | hbbe1.3 | -0.150 |
| hoxc3a | 0.305 | hbbe2 | -0.149 |
| hoxa11b | 0.304 | hbae1.3 | -0.147 |
| hoxd10a | 0.300 | hbbe1.1 | -0.146 |
| hoxb10a | 0.295 | cahz | -0.140 |
| hoxb8a | 0.286 | blvrb | -0.139 |
| hoxc8a | 0.277 | hemgn | -0.132 |
| etv2 | 0.271 | hbbe1.2 | -0.128 |
| BX005254.3 | 0.253 | tspo | -0.126 |
| aqp8a.1 | 0.248 | alas2 | -0.124 |
| hoxc6b | 0.247 | slc4a1a | -0.120 |
| hoxa9b | 0.246 | nt5c2l1 | -0.115 |
| hoxa10b | 0.243 | si:ch211-250g4.3 | -0.113 |
| ndnf | 0.226 | zgc:163057 | -0.112 |
| tpm4a | 0.224 | creg1 | -0.110 |
| cdx4 | 0.220 | epb41b | -0.109 |
| hoxa11a | 0.218 | gpx1a | -0.106 |
| XLOC-042222 | 0.217 | si:ch211-207c6.2 | -0.106 |
| hoxc10a | 0.215 | fth1a | -0.104 |
| hoxc11a | 0.214 | nmt1b | -0.103 |
| stab2 | 0.213 | plac8l1 | -0.100 |
| marcksl1a | 0.210 | tmod4 | -0.095 |
| dab2 | 0.210 | tmem14ca | -0.094 |
| hoxd3a | 0.209 | si:ch211-227m13.1 | -0.090 |
| fbln1 | 0.208 | mcl1a | -0.086 |
| BX001014.2 | 0.205 | hbae5 | -0.086 |
| her12 | 0.200 | klf1 | -0.085 |
| krt18a.1 | 0.199 | rfesd | -0.084 |
| arid3b | 0.199 | ucp3 | -0.081 |
| mnx1 | 0.198 | tfr1a | -0.081 |
| postnb | 0.198 | hdr | -0.081 |
| dact2 | 0.195 | uros | -0.080 |