| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb8a | 0.238 | foxg1b | -0.017 |
| hoxb7a | 0.238 | pkma | -0.016 |
| hoxc9a | 0.219 | si:ch211-152c2.3 | -0.015 |
| hoxc3a | 0.218 | NC-002333.4 | -0.015 |
| hoxd9a | 0.198 | vsx2 | -0.015 |
| hoxa9a | 0.185 | cplx3b | -0.015 |
| hoxc8a | 0.185 | six3b | -0.014 |
| hoxb10a | 0.176 | rrm1 | -0.014 |
| ednrab | 0.166 | dhx32b | -0.014 |
| hoxa9b | 0.163 | prss59.1 | -0.013 |
| hoxa10b | 0.140 | rgra | -0.013 |
| crestin | 0.139 | haus4 | -0.013 |
| hoxd3a | 0.137 | prss59.2 | -0.013 |
| hoxc10a | 0.119 | kpnb3 | -0.013 |
| BX248318.1 | 0.118 | prss1 | -0.013 |
| hoxd12a | 0.107 | cadm3 | -0.013 |
| hoxa11b | 0.106 | tkta | -0.013 |
| hoxb3a | 0.105 | XLOC-042899 | -0.012 |
| tuba8l3 | 0.103 | anp32e | -0.012 |
| pmp22a | 0.101 | rorb | -0.012 |
| hoxd11a | 0.099 | shisa2a | -0.012 |
| hoxd10a | 0.097 | slc38a3a | -0.012 |
| or104-1 | 0.097 | zic2b | -0.012 |
| hoxc6b | 0.094 | idi1 | -0.012 |
| hoxc11a | 0.093 | mpp6b | -0.012 |
| znf1004 | 0.092 | pvalb2 | -0.012 |
| hoxa3a | 0.091 | zmp:0000000624 | -0.012 |
| hoxb1b | 0.089 | six6b | -0.012 |
| crabp1b | 0.089 | krcp | -0.012 |
| col5a2a | 0.088 | col4a4 | -0.011 |
| hoxc13a | 0.086 | nol6 | -0.011 |
| LOC108179355 | 0.086 | hspb1 | -0.011 |
| XLOC-028064 | 0.085 | mcm4 | -0.011 |
| nanos1 | 0.083 | mt-co2 | -0.011 |
| foxd3 | 0.081 | COX3 | -0.011 |