| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb9a | 0.320 | hbae1.1 | -0.117 |
| hoxd10a | 0.300 | hbae3 | -0.114 |
| hoxd9a | 0.296 | hbbe1.3 | -0.113 |
| hoxb10a | 0.287 | hbae1.3 | -0.109 |
| hoxa11b | 0.283 | hbbe2 | -0.108 |
| hoxc3a | 0.282 | hbbe1.1 | -0.107 |
| hoxa9b | 0.278 | prdx2 | -0.107 |
| hoxb7a | 0.275 | cahz | -0.103 |
| hoxc9a | 0.273 | blvrb | -0.100 |
| hoxa11a | 0.261 | hemgn | -0.099 |
| hoxa10b | 0.244 | hbbe1.2 | -0.093 |
| hoxc8a | 0.237 | alas2 | -0.091 |
| BX005254.3 | 0.231 | slc4a1a | -0.088 |
| hoxd11a | 0.222 | zgc:163057 | -0.086 |
| hoxd12a | 0.218 | tspo | -0.086 |
| cdx4 | 0.212 | si:ch211-250g4.3 | -0.085 |
| mnx1 | 0.209 | epb41b | -0.084 |
| hoxc10a | 0.208 | nt5c2l1 | -0.084 |
| hoxc11a | 0.204 | gpx1a | -0.083 |
| etv2 | 0.194 | creg1 | -0.082 |
| stab2 | 0.190 | nmt1b | -0.079 |
| hoxc6b | 0.190 | si:ch211-207c6.2 | -0.078 |
| dab2 | 0.184 | tmem14ca | -0.072 |
| BX001014.2 | 0.181 | plac8l1 | -0.071 |
| hoxd3a | 0.181 | fth1a | -0.071 |
| hoxc11b | 0.179 | tmod4 | -0.069 |
| fbln1 | 0.177 | si:ch211-227m13.1 | -0.068 |
| hoxb8a | 0.175 | sptb | -0.065 |
| postnb | 0.175 | tfr1a | -0.064 |
| vox | 0.170 | rfesd | -0.064 |
| tbxtb | 0.168 | hdr | -0.064 |
| dact2 | 0.168 | hbae5 | -0.061 |
| XLOC-042222 | 0.165 | mibp2 | -0.061 |
| il13ra2 | 0.162 | klf1 | -0.060 |
| mrc1a | 0.162 | TCIM (1 of many) | -0.058 |