| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb9a | 0.185 | ccnd1 | -0.014 |
| hoxd9a | 0.165 | nop16 | -0.013 |
| hoxc10a | 0.159 | dek | -0.012 |
| hoxa10b | 0.150 | pum3 | -0.011 |
| hoxc9a | 0.147 | chaf1a | -0.011 |
| hoxa9b | 0.143 | utp11l | -0.011 |
| hoxd10a | 0.130 | rpa3 | -0.011 |
| hoxb10a | 0.129 | zmp:0000000624 | -0.011 |
| hoxa11b | 0.122 | odc1 | -0.011 |
| si:dkey-112g5.11 | 0.121 | fzd5 | -0.011 |
| hoxd3a | 0.118 | hat1 | -0.011 |
| hoxc3a | 0.116 | apoa2 | -0.010 |
| hoxc12b | 0.114 | anp32a | -0.010 |
| hoxc8a | 0.102 | rrs1 | -0.010 |
| hoxc13a | 0.102 | ssna1 | -0.010 |
| hoxb8a | 0.100 | krt17 | -0.010 |
| hoxd12a | 0.098 | noc2l | -0.010 |
| hoxd11a | 0.097 | prss1 | -0.010 |
| crabp1b | 0.082 | uhrf1 | -0.010 |
| hoxa11a | 0.081 | snu13b | -0.010 |
| hoxc11a | 0.080 | dnajc9 | -0.010 |
| hoxa3a | 0.078 | anp32e | -0.010 |
| mnx2a | 0.075 | pole3 | -0.010 |
| hoxc13b | 0.073 | mms22l | -0.010 |
| hoxc12a | 0.072 | fbxo5 | -0.010 |
| tuba8l3 | 0.071 | rbm19 | -0.010 |
| LOC108190371 | 0.070 | sart3 | -0.010 |
| hoxc11b | 0.069 | mybl1 | -0.009 |
| hoxa13b | 0.068 | mcm10 | -0.009 |
| XLOC-028064 | 0.067 | dbf4 | -0.009 |
| si:ch211-196h24.1 | 0.066 | dnmt1 | -0.009 |
| hapln1a | 0.065 | tbx2a | -0.009 |
| hoxc6b | 0.062 | pold1 | -0.009 |
| mnx2b | 0.062 | psmc3ip | -0.009 |
| XLOC-033087 | 0.061 | apoa1b | -0.009 |