| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| cdx4 | 0.470 | gapdhs | -0.153 |
| hoxb10a | 0.464 | rplp2 | -0.148 |
| hoxb7a | 0.457 | krt91 | -0.142 |
| hoxb9a | 0.447 | capns1a | -0.142 |
| BX005254.3 | 0.443 | eef1da | -0.141 |
| hoxc8a | 0.392 | anxa1a | -0.130 |
| hoxd9a | 0.384 | igfbp7 | -0.127 |
| crabp2a | 0.384 | anxa2a | -0.127 |
| hoxd12a | 0.375 | aqp3a | -0.127 |
| emx2 | 0.369 | krtt1c19e | -0.120 |
| hoxa10b | 0.368 | ahcy | -0.116 |
| LOC101882251 | 0.367 | s100v1 | -0.115 |
| sp8b | 0.366 | si:dkey-33c14.3 | -0.115 |
| hoxc3a | 0.366 | capgb | -0.114 |
| insl5a | 0.365 | rps29 | -0.111 |
| vcana | 0.361 | cxl34b.11 | -0.110 |
| hoxd10a | 0.357 | col1a1b | -0.110 |
| hoxc6b | 0.357 | ak1 | -0.109 |
| hoxa9b | 0.342 | epgn | -0.109 |
| apoc1 | 0.337 | sparc | -0.109 |
| hoxd11a | 0.318 | pvalb2 | -0.106 |
| hoxa11b | 0.312 | cotl1 | -0.105 |
| prickle1a | 0.305 | pvalb1 | -0.105 |
| sp5l | 0.301 | rbp4 | -0.104 |
| cdaa | 0.300 | s100v2 | -0.104 |
| mllt3 | 0.298 | pycard | -0.103 |
| ccdc3a | 0.297 | rhbg | -0.102 |
| hoxc11b | 0.296 | s100a10b | -0.102 |
| nradd | 0.295 | col1a2 | -0.101 |
| nkx1.2la | 0.293 | gsto2 | -0.101 |
| apela | 0.291 | si:ch211-39i22.1 | -0.099 |
| hoxd3a | 0.284 | gstm.3 | -0.099 |
| BX001014.2 | 0.276 | icn | -0.099 |
| BX927258.1 | 0.275 | caspb | -0.099 |
| asb11 | 0.271 | ociad2 | -0.099 |