| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb9a | 0.484 | fabp7a | -0.290 |
| hoxb10a | 0.379 | atp1a1b | -0.226 |
| hoxc9a | 0.368 | qki2 | -0.199 |
| hoxd9a | 0.358 | ppap2d | -0.196 |
| hoxa9b | 0.342 | cd63 | -0.192 |
| myt1b | 0.333 | ptn | -0.189 |
| robo3 | 0.327 | id1 | -0.188 |
| jagn1a | 0.317 | itm2ba | -0.186 |
| scrt1a | 0.312 | gpm6bb | -0.185 |
| elavl3 | 0.312 | cd82a | -0.184 |
| hoxa10b | 0.311 | efhd1 | -0.184 |
| lhx1a | 0.310 | glula | -0.178 |
| hoxa11b | 0.303 | nfia | -0.177 |
| tmeff1b | 0.299 | CR848047.1 | -0.177 |
| hoxc10a | 0.296 | slc1a2b | -0.177 |
| scrt2 | 0.294 | zgc:165461 | -0.176 |
| si:ch73-386h18.1 | 0.292 | CU467822.1 | -0.175 |
| LOC100537384 | 0.292 | sparc | -0.174 |
| nhlh2 | 0.289 | atp1b4 | -0.173 |
| hoxd3a | 0.289 | si:ch211-66e2.5 | -0.169 |
| thsd7aa | 0.288 | jun | -0.167 |
| stap2a | 0.276 | her6 | -0.163 |
| hoxc3a | 0.273 | msi1 | -0.163 |
| hmgn6 | 0.272 | slc1a3b | -0.162 |
| h3f3d | 0.270 | gnai2a | -0.159 |
| gdf11 | 0.270 | si:dkey-7j14.6 | -0.159 |
| nrn1a | 0.268 | klf6a | -0.157 |
| epb41a | 0.264 | fgfr2 | -0.157 |
| zfhx3 | 0.264 | sox2 | -0.157 |
| hoxd10a | 0.263 | gpr37l1b | -0.156 |
| lhx5 | 0.260 | sox9a | -0.153 |
| myt1a | 0.258 | cxcl12a | -0.152 |
| hnrnpa0a | 0.257 | msna | -0.152 |
| atcaya | 0.256 | atp1b1a | -0.152 |
| hoxb8a | 0.256 | cd81a | -0.151 |