| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxc3a | 0.085 | pvalb1 | -0.020 |
| hoxb9a | 0.072 | pvalb2 | -0.019 |
| hoxb10a | 0.071 | actc1b | -0.017 |
| hoxc8a | 0.070 | hbae3 | -0.015 |
| hoxb7a | 0.063 | hbbe2 | -0.015 |
| hoxb8a | 0.061 | apoa1b | -0.014 |
| hoxc9a | 0.058 | cahz | -0.014 |
| hoxb1b | 0.057 | hbae1.1 | -0.014 |
| hoxd10a | 0.057 | hbae1.3 | -0.014 |
| BX005254.3 | 0.055 | hbbe1.1 | -0.014 |
| hoxa9a | 0.055 | hbbe1.3 | -0.014 |
| hoxc6b | 0.054 | mylpfa | -0.014 |
| hoxa10b | 0.053 | bhmt | -0.014 |
| hoxb6b | 0.052 | apoa2 | -0.013 |
| hoxc1a | 0.052 | mylz3 | -0.013 |
| hoxb3a | 0.050 | otx2b | -0.013 |
| hoxd9a | 0.050 | slc4a1a | -0.013 |
| XLOC-001964 | 0.050 | tnnt3b | -0.013 |
| hoxa9b | 0.047 | alas2 | -0.012 |
| BX001014.2 | 0.045 | epb41b | -0.012 |
| hoxb6a | 0.044 | hbbe1.2 | -0.012 |
| hoxd3a | 0.044 | hemgn | -0.012 |
| hoxa11b | 0.043 | nt5c2l1 | -0.012 |
| hoxc10a | 0.042 | si:ch211-250g4.3 | -0.012 |
| hoxd11a | 0.042 | tmod4 | -0.012 |
| sall4 | 0.042 | tnni2a.4 | -0.012 |
| hoxd12a | 0.041 | zgc:163057 | -0.012 |
| hoxb8b | 0.040 | ckma | -0.011 |
| ldlrad2 | 0.040 | ckmb | -0.011 |
| cdx4 | 0.039 | fibina | -0.011 |
| hoxa3a | 0.039 | foxg1b | -0.011 |
| hoxc11a | 0.039 | si:ch211-207c6.2 | -0.011 |
| her1 | 0.039 | syt5b | -0.011 |
| BX005254.2 | 0.038 | atp2a1 | -0.011 |
| CABZ01075068.1 | 0.038 | col9a1a | -0.011 |