| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| pitx2 | 0.464 | meis1b | -0.100 |
| dmrta2 | 0.418 | hoxb3a | -0.088 |
| lmx1ba | 0.394 | vim | -0.087 |
| barhl1b | 0.297 | hoxc3a | -0.079 |
| shha | 0.291 | hoxb9a | -0.076 |
| lmx1bb | 0.288 | si:ch73-265d7.2 | -0.069 |
| barhl1a | 0.252 | hoxb8a | -0.068 |
| tmem88b | 0.221 | hoxd3a | -0.067 |
| prdx1 | 0.208 | znf503 | -0.064 |
| emx2 | 0.187 | calm2a | -0.064 |
| foxa2 | 0.180 | hoxb1b | -0.064 |
| nkx2.4a | 0.162 | hoxc9a | -0.061 |
| sox11a | 0.161 | hoxa3a | -0.060 |
| rasl11a | 0.158 | gas1b | -0.060 |
| epha7 | 0.158 | hoxb7a | -0.059 |
| foxa1 | 0.157 | gapdhs | -0.059 |
| lmx1al | 0.148 | hoxd9a | -0.059 |
| vasna | 0.144 | cadm3 | -0.059 |
| dhx32b | 0.139 | hoxa9a | -0.058 |
| CU459056.1 | 0.139 | hoxc8a | -0.056 |
| lrrn1 | 0.137 | syt11a | -0.056 |
| zbtb16b | 0.135 | pax3a | -0.054 |
| im:7152348 | 0.132 | hoxb10a | -0.054 |
| barhl2 | 0.132 | meis2b | -0.054 |
| fgfr3 | 0.126 | hoxa10b | -0.053 |
| sema3bl | 0.119 | sp8b | -0.053 |
| pkdcca | 0.117 | meis1a | -0.053 |
| arxa | 0.113 | hoxa9b | -0.052 |
| ascl1a | 0.112 | stx1b | -0.051 |
| ntn1b | 0.112 | atp1a1b | -0.051 |
| LOC103911485 | 0.109 | ndnf | -0.051 |
| otx2a | 0.107 | gng3 | -0.051 |
| wls | 0.105 | si:ch211-251b21.1 | -0.051 |
| nin | 0.105 | snap25a | -0.051 |
| dbx1a | 0.105 | nsg2 | -0.050 |