| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| pitx2 | 0.350 | meis1b | -0.051 |
| foxa1 | 0.169 | sox3 | -0.045 |
| dmrta2 | 0.147 | mdka | -0.044 |
| lmx1ba | 0.122 | meis2b | -0.042 |
| foxa2 | 0.119 | sox19a | -0.040 |
| sim1a | 0.112 | gas1b | -0.039 |
| sim1b | 0.111 | meis2a | -0.038 |
| pitx1 | 0.090 | znf503 | -0.037 |
| nkx2.7 | 0.088 | hoxb3a | -0.037 |
| prop1 | 0.086 | pcna | -0.037 |
| shha | 0.085 | mab21l1 | -0.036 |
| adcyap1b | 0.084 | pax3a | -0.036 |
| lmx1bb | 0.083 | sb:cb81 | -0.035 |
| fkbp1ab | 0.078 | msna | -0.034 |
| uncx | 0.075 | rrm1 | -0.034 |
| tcf21 | 0.070 | stmn1a | -0.034 |
| pknox2 | 0.068 | si:ch211-137a8.4 | -0.034 |
| nrn1a | 0.065 | XLOC-003690 | -0.034 |
| foxl2b | 0.063 | her15.1 | -0.033 |
| lmx1al | 0.061 | her2 | -0.033 |
| fermt1 | 0.059 | sox2 | -0.032 |
| tbx1 | 0.055 | cldn5a | -0.032 |
| neurod6a | 0.055 | lbr | -0.032 |
| foxl2a | 0.055 | XLOC-003689 | -0.031 |
| krt96 | 0.054 | dut | -0.031 |
| barhl2 | 0.054 | zic2b | -0.031 |
| sim2 | 0.053 | hmgb2a | -0.031 |
| calhm6 | 0.052 | her8a | -0.031 |
| slc17a6a | 0.052 | rrm2 | -0.031 |
| pou3f2a | 0.052 | gfap | -0.030 |
| barhl1b | 0.052 | rpa3 | -0.030 |
| ntng1a | 0.052 | fabp7a | -0.030 |
| pdzrn3b | 0.051 | fen1 | -0.030 |
| nr4a2a | 0.049 | selenoh | -0.030 |
| arl3l1 | 0.049 | nasp | -0.030 |