| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| pitx2 | 0.474 | col1a1b | -0.129 |
| scinla | 0.473 | meis1b | -0.108 |
| pitx1 | 0.389 | col12a1a | -0.100 |
| si:dkey-164f24.2 | 0.381 | hapln1a | -0.096 |
| tkta | 0.374 | meis1a | -0.093 |
| gyg1b | 0.329 | mab21l2 | -0.092 |
| ccka | 0.328 | col5a2a | -0.091 |
| lrrc58a | 0.320 | col1a1a | -0.084 |
| tubb6 | 0.319 | cpn1 | -0.082 |
| wnt9b | 0.296 | fgfbp2b | -0.075 |
| lmx1bb | 0.294 | dlx5a | -0.072 |
| lmx1ba | 0.289 | barx1 | -0.071 |
| mgarp | 0.280 | hand2 | -0.070 |
| atp1b1a | 0.262 | cdh11 | -0.069 |
| FO681288.1 | 0.252 | hoxb3a | -0.069 |
| aqp3a | 0.252 | si:ch211-156j16.1 | -0.067 |
| qdpra | 0.245 | gsc | -0.066 |
| thrap3a | 0.238 | ecrg4a | -0.066 |
| fgl2a | 0.238 | xbp1 | -0.065 |
| alpl | 0.237 | pcolcea | -0.064 |
| fhl2a | 0.237 | mab21l1 | -0.063 |
| gpc1a | 0.234 | col6a4a | -0.063 |
| tmtops2a | 0.233 | ier2b | -0.063 |
| timp4.1 | 0.232 | mdka | -0.063 |
| myoc | 0.216 | dlx2a | -0.062 |
| spock3 | 0.213 | col5a1 | -0.059 |
| gbe1a | 0.213 | cdh6 | -0.058 |
| si:dkey-16p21.8 | 0.206 | dcn | -0.058 |
| acta2 | 0.201 | dlx4a | -0.057 |
| slc7a11 | 0.201 | rcn3 | -0.057 |
| chrna4b | 0.199 | dlx1a | -0.056 |
| tfap2b | 0.199 | tenm3 | -0.056 |
| pawr | 0.194 | cd63 | -0.056 |
| si:dkey-238f9.1 | 0.191 | cspg4 | -0.056 |
| ppp1r3cb | 0.191 | meis2b | -0.056 |